/FIDDLE

functional genomic data integration

Primary LanguageJupyter NotebookMIT LicenseMIT

FIDDLE

Flexible Integration of Data with Deep LEarning

a novel deep neural network approach towards functional genomic data integration

FIDDLE notebook 🎻

directory architecture

├── < head_dir >
│   ├── logs/
│   ├── DATA/
│   │   ├── RAW/
│   │   │   ├── annotations
│   │   │   ├── bedgraphs
│   │   │   ├── txt
│   │   ├── COLLATED/
│   ├── MODELS/
│   │   ├── FIGURES_STATS/
│   │   ├── INPUTS/
│   │   ├── OUTPUTS/
│   │   ├── TRAINED/
│   │   ├── SCRIPTS/
│   │   │   ├── sc_train_split.py
│   │   │   ├── fiddle.py
│   │   │   ├── collate_outputs.py

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note: an HPC cluster with GPUs is recommended

coding environment instructions