dylkot
Physician scientist specializing in systems immunology and the study of autoimmune disease
Brigham and Women's Hospital
Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
cNMF
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
dropSeqPipe-dak
run dropseq - slight modifications from original dropSeqPipe
harmonypy
🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
HIBAG_Utils
Contains helper functions for running HIBAG HLA prediction on genetic data
lassa_fever_gwas
Jupyter notebooks and helper scripts for the Sabeti Lab Lassa Fever GWAS
pyWNN
Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)
SC-Ebola
Analysis scripts used in the analysis of Seq-Well and CyTOF datasets of Ebola virus infected PBMCs
scsim
Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells and cells with shared gene-expression programs.
scsim2
Updated scsim to allow simulation of arbitrary numbers of activity programs
dylkot's Repositories
dylkot/cNMF
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
dylkot/scsim
Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells and cells with shared gene-expression programs.
dylkot/pyWNN
Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)
dylkot/SC-Ebola
Analysis scripts used in the analysis of Seq-Well and CyTOF datasets of Ebola virus infected PBMCs
dylkot/lassa_fever_gwas
Jupyter notebooks and helper scripts for the Sabeti Lab Lassa Fever GWAS
dylkot/dropSeqPipe-dak
run dropseq - slight modifications from original dropSeqPipe
dylkot/bioconda-recipes
Conda recipes for the bioconda channel.
dylkot/harmonypy
🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
dylkot/HIBAG_Utils
Contains helper functions for running HIBAG HLA prediction on genetic data
dylkot/scsim2
Updated scsim to allow simulation of arbitrary numbers of activity programs
dylkot/Tcell_Annotator
Notebooks and codebase for T-cell annotation project