dzyla
PostDoc in the Saphire group at the LJI. ETHZ Alumnus. Structural biology/protein biochemistry. #cryoEM #python
La Jolla Institute for ImmunologySan Diego
Pinned Repositories
biorxiv_search
Fast semantic search for biorXiv manuscripts
cryoem_notebook
Cryo-EM notebook example for processing in Relion and cryoSPARC
cryoEM_plotly
Plot the cryoEM maps using plotly and open them in the browser!
EPU_beamtiltclasses
Very simple script for EPU users which adds beam tilt classes to the star file
Follow_Relion_gracefully
New script to follow Relion projects in a browser!
MRC_napari_viewer
Cryo-EM data viewer in napari
Relion_follow_classification
Follow your classification and refinement in Relion the real time!
Relion_star_parser
A simple .star file parser which allows Relion star file plotting, modification and conversion
relion_to_cistem
Converts autopick cooridinates from Relion to cisTEM
umod_processing_scripts
A library of scripts which were used to analyze and visualize the data
dzyla's Repositories
dzyla/Follow_Relion_gracefully
New script to follow Relion projects in a browser!
dzyla/EPU_beamtiltclasses
Very simple script for EPU users which adds beam tilt classes to the star file
dzyla/biorxiv_search
Fast semantic search for biorXiv manuscripts
dzyla/cryoem_notebook
Cryo-EM notebook example for processing in Relion and cryoSPARC
dzyla/30-Days-Of-Python
30 days of Python programming challenge is a step-by-step guide to learn the Python programming language in 30 days. This challenge may take more than100 days, follow your own pace.
dzyla/aitom
AI for tomography
dzyla/equidock_public
EquiDock: geometric deep learning for fast rigid 3D protein-protein docking
dzyla/Hugo_shortcode_gallery
simple yet stylish Hugo shorcode gallery
dzyla/LaPreprint
📝 A nicely formatted LaTeX preprint template
dzyla/learn_cryoem_math
dzyla/protein-reconstruction
Learning to recover orientations from projections in single-particle cryo-EM
dzyla/relion
Image-processing software for cryo-electron microscopy
dzyla/rmsd
Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format
dzyla/script_repo
Repository to keep some my scripts on Github
dzyla/segment-anything
An unofficial Python package for Meta AI's Segment Anything Model
dzyla/select_micrographs_from_jpegs
dzyla/simplerecon
[ECCV 2022] SimpleRecon: 3D Reconstruction Without 3D Convolutions
dzyla/system_utils
Some general system tools (info and GPU stress)
dzyla/40years_of_cryoem
Abstract embaddings of cryo-EM related manuscripts from PubMed and bioRxiv
dzyla/dzyla-photo-comments
comments for the website
dzyla/generative-ai-for-beginners
12 Lessons, Get Started Building with Generative AI 🔗 https://microsoft.github.io/generative-ai-for-beginners/
dzyla/GlycoSHIELD-MD
dzyla/lapreprint1
dzyla/MoMAColors
Color Schemes based around artwork and the Museum of Modern Art.
dzyla/pilus_stability
Code related to pilus stability manuscript
dzyla/plenopticam
Light-field imaging application for plenoptic cameras
dzyla/plot-chormatogram
dzyla/samila
Generative Art Generator
dzyla/surfwithbeniz
bday gift website joke
dzyla/swot
Identify email addresses or domains names that belong to colleges or universities. Help automate the process of approving or rejecting academic discounts.