eachanjohnson
Group leader at @FrancisCrickInstitute Systems Chemical Biology of Infection and Resistance lab
@FrancisCrickInstituteLondon, UK
Pinned Repositories
concensusGLM
Microbial fitness inference from barcode counts.
ConcensusMap
Count barcodes in FASTQ files
cookiecutter-cgtb
Boilerplate for Chemical Genomics of Tuberculosis project
datamol
Molecular Processing Made Easy.
dimpyplot
A Python frontend to the LigPlot+ program, allowing batch processing of Protein Data Bank (PDB) files through the DIMPLOT algorithm.
errR
Graceful error handling in R
mbta-live
Dotty visualization of Boston's MBTA public transportation system using d3.js
rhesurch
Python library for getting (bio)chemical data from web-based APIs
workflows
Pipeline construction and execution in R
eachanjohnson's Repositories
eachanjohnson/ConcensusMap
Count barcodes in FASTQ files
eachanjohnson/errR
Graceful error handling in R
eachanjohnson/concensusGLM
Microbial fitness inference from barcode counts.
eachanjohnson/dimpyplot
A Python frontend to the LigPlot+ program, allowing batch processing of Protein Data Bank (PDB) files through the DIMPLOT algorithm.
eachanjohnson/mbta-live
Dotty visualization of Boston's MBTA public transportation system using d3.js
eachanjohnson/rhesurch
Python library for getting (bio)chemical data from web-based APIs
eachanjohnson/cookiecutter-cgtb
Boilerplate for Chemical Genomics of Tuberculosis project
eachanjohnson/datamol
Molecular Processing Made Easy.
eachanjohnson/gordium
Fast demultiplexing of Illumina FASTQ files using Python.
eachanjohnson/workflows
Pipeline construction and execution in R
eachanjohnson/is-the-t-running
One word answer to the question
eachanjohnson/labnoteify
Framework to turn all your random data files and emails into an HTML lab notebook
eachanjohnson/packEJ
Personal R package
eachanjohnson/plaintext-planner
directory structure and management scripts for a plaintext planner
eachanjohnson/slype
Framework for building in-browser data-based presentations
eachanjohnson/snakemake-broad-uger
Snakemake profile to execute workflows on the Broad Institute UGER cluster
eachanjohnson/UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets
eachanjohnson/unpack_pse
Python script for extracting Protein Data Bank (PDB) files from a PyMOL session (PSE) file.
eachanjohnson/unsoftmaxme
Turns cumbersome Molecular Devices Spectramax Softmax data files into a usable tidy CSV