eagmon

computational systems biology

University of Connecticut

Pinned Repositories

biosimulations
A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results
Language:TypeScript38 7 1.3k13
Biosimulators
Registry of containerized biosimulation tools that support a standard command-line interface
Language:Python13 10 5570
vEcoli
Whole cell model of E. coli implemented with Vivarium
Language:Jupyter Notebook12 16 223
wcEcoli
Whole Cell Model of E. coli
Language:Python18 18 3694
co-construction_base
Model as described in Agmon, Gates, Churavy, and Beer (2015)
Language:MATLAB01
eagmon.github.io
Agmon lab website
Language:SCSS10
notebook_tests
Language:Jupyter Notebook0 1 00
bigraph-viz
visualization tool for bigraph schema
Language:Jupyter Notebook00
process-bigraph
Language:Jupyter Notebook2 2 601
vivarium-core
Core Interface and Engine for Vivarium
Language:Python23 5 432

eagmon's Repositories

eagmon/eagmon.github.io
Agmon lab website
Language:SCSS10
eagmon/co-construction_base
Model as described in Agmon, Gates, Churavy, and Beer (2015)
Language:MATLAB01
eagmon/notebook_tests
Language:Jupyter Notebook0 1 00