eagmon

computational systems biology

University of Connecticut

Pinned Repositories

biosimulations
A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results
Language:TypeScript39 7 1.3k14
Biosimulators
Registry of containerized biosimulation tools that support a standard command-line interface
Language:Python13 10 5650
vEcoli
Whole cell model of E. coli implemented with Vivarium
Language:Jupyter Notebook12 16 233
wcEcoli
Whole Cell Model of E. coli
Language:Python19 18 3694
co-construction_base
Model as described in Agmon, Gates, Churavy, and Beer (2015)
Language:MATLAB0 1 01
eagmon.github.io
Agmon lab website
Language:SCSS1 1 00
notebook_tests
Language:Jupyter Notebook0 1 00
bigraph-viz
visualization tool for bigraph schema
Language:Jupyter Notebook00
process-bigraph
Language:Jupyter Notebook2 2 601
vivarium-core
Core Interface and Engine for Vivarium
Language:Python26 5 433

eagmon's Repositories

eagmon/eagmon.github.io
Agmon lab website
Language:SCSS1 1 00
eagmon/co-construction_base
Model as described in Agmon, Gates, Churavy, and Beer (2015)
Language:MATLAB0 1 01
eagmon/notebook_tests
Language:Jupyter Notebook0 1 00