easlinger
Associate Scientist | Pathology, Molecular & Cell-Based Medicine | Icahn School of Medicine at Mount Sinai
Icahn School of Medicine at Mount Sinai
easlinger's Stars
conradry/prtm
Deep learning for protein science
ckmah/bento-tools
A Python toolkit for subcellular analysis of spatial transcriptomics data
BiomedicalMachineLearning/stLearn
A novel machine learning pipeline to analyse spatial transcriptomics data
scverse/napari-spatialdata
Interactive visualization of spatial omics data
squidfunk/mkdocs-material
Documentation that simply works
jcupitt/vipsdisp
Tiny libvips / gtk+4 image viewer
scverse/spatialdata
An open and interoperable data framework for spatial omics data
slowkow/harmonypy
🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
seandavi/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
scverse/pertpy-tutorials
scverse/pertpy
Perturbation Analysis in the scverse ecosystem.
ChoBioLab/corescpy
A wrapper to simplify the execution of Single Cell analysis with the sc verse
loosolab/TOBIAS
Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
ChoBioLab/annotation
A wrapper to execute the CellTypist automated annotation method with Seurat objects.
klarman-cell-observatory/perturbseq
Perturb-seq analysis package
biobotanalytics/nationwide-trends-biobot-public
Data associated with Duvallet et al. 2022 publication, "Nationwide trends in COVID-19 cases and SARS-CoV-2 RNA wastewater concentrations in the United States"
NARKOZ/hacker-scripts
Based on a true story
smathot/academicmarkdown
Academic writing with Markdown
labstreaminglayer/pylsl
Python bindings (pylsl) for liblsl
NeuroanatomyAndConnectivity/ConjunctiveContinuousPerformanceTask
Conjunctive Continuous Performance Task - a sustained attention test
fladd/collaborative_timing_tests
chrplr/PCBS
Programming for Cognitive and Brain Sciences (code and lectures notes for the Cogmaster's PCBS course)
labstreaminglayer/App-Cognionics
mbroedl/cognitive-tasks-for-expyriment
A battery of cognitive tasks for the python toolkit expyriment. Programmed for the use on android and desktop devices.
kishan1408/EEG-Trigger
Trigger to sync eeg device with psychtoolbox events
mulimoen/EEGportcodes
Send portcodes/triggger codes from display computer to EEG recorder
glmmTMB/glmmTMB
glmmTMB
lmfit/lmfit-py
Non-Linear Least Squares Minimization, with flexible Parameter settings, based on scipy.optimize, and with many additional classes and methods for curve fitting.
pyRiemann/pyRiemann
Machine learning for multivariate data through the Riemannian geometry of positive definite matrices in Python
sstober/ismir2014-deepbeat
Python code for computations and plotting for the paper: Sebastian Stober, Daniel J. Cameron, and Jessica A. Grahn: "Classifying EEG Recordings of Rhythm Perception", in Proceedings of 15th International Society for Music Information Retrieval Conference (ISMIR'14), 2014.