SuNBEaM
This package provides code to compute the (S)pectral (N)on-(B)acktracking (E)igenvalue Pseudo-(M)etric, or SuNBEaM for short. The non-backtracking matrix is a matrix representation of a graph that has deep connections with the theory of the length spectrum. The eigenvalues of the non-backtracking matrix can be effectively used to compute dissimilarity scores (or distances) between graphs. For more information, see
Leo Torres, P. Suárez Serrato, and T. Eliassi-Rad, Graph Distance from the Topological View of Non-Backtracking Cycles, preprint, arXiv:1807.09592 [cs.SI], (2018).
All experiments and figures in this paper were generated with an earlier version of the code in this repository.
Installation
To install, simply git clone this repository, import the sunbeam module
and call the nbdist function. For sunbeam to work correctly you need to
have installed NumPy, SciPy, NetworkX, and (optionally) Matplotlib.
Example
A minimal example of how to use sunbeam.py:
import sunbeam
import networkx as nx
er = nx.erdos_renyi_graph(300, 0.05)
ba = nx.barabasi_albert_graph(300, 3)
sunbeam.nbdist(er, ba, 20) # 15.327196615382533
sunbeam.nbdist(er, ba, 20, sigma=11, eta=0.6) # 596.05874770609171
A more extensive example of the functionality provided in sunbeam.py can
be found in the example notebook.