Pinned Repositories
bloom-desktop-pilot
Trying to interface with a camera and DAQ from an electron app
CountThrips
Detect thrips on yellow sticky cards using SLEAP. Count the number of thrips per card. Read the QR code on each sticky card and associate the count with the QR code.
internal-dockerfiles
dockerfiles for talmo
intro_python_class
Intro to python tutorial
param-pilot
Hyperparameter search
Ariadne
Berrigan_et_al_sleap-roots
Code for figures and analyses in Berrigan et al.
sleap
A deep learning framework for multi-animal pose tracking.
sleap-deps
Packages necessary for sleap build maintained by the SLEAP team.
sleap-roots
Analysis tools for SLEAP-based plant root phenotyping.
eberrigan's Repositories
eberrigan/bloom-desktop-pilot
Trying to interface with a camera and DAQ from an electron app
eberrigan/CountThrips
Detect thrips on yellow sticky cards using SLEAP. Count the number of thrips per card. Read the QR code on each sticky card and associate the count with the QR code.
eberrigan/internal-dockerfiles
dockerfiles for talmo
eberrigan/intro_python_class
Intro to python tutorial
eberrigan/param-pilot
Hyperparameter search
eberrigan/root_painter
RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation
eberrigan/sleap
A deep learning framework for multi-animal pose tracking.
eberrigan/sleap-roots-training
Jupyter notebooks for training and evaluating models for use in the sleap-roots-pipeline. Weights and Biases logging is integrated.
eberrigan/umap
Uniform Manifold Approximation and Projection
eberrigan/yolov8-object-detection
Pilot to find contamination in cylinders using yolov8 object detection