Improve smartseq2_has_2-3_files to allow 1 fastq if the sequencing is single ended
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idazucchi commented
Describe the bug
The graph validator raises the smartseq2_has_2-3_files error even if the sequencing is single-ended
To Reproduce
Steps to reproduce the behavior:
-
Upload a submission in ingest with:
- Library preparation: SmartSeq2
- Sequencing protocol: single end
- One fastq file per plate well
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Click on Validate submission
-
See error
Desired behavior
For SmartSeq2 if the sequencing is single-ended the graph validator should allow to have one fastq per process, without raising an error.
Already discussed with @ESapenaVentura