ebi-ait/ingest-graph-validator

Issues

• 2022-04-25: Modify no_orphaned.adoc to capture orphaned biomaterials

  #83 opened 2 years ago
  0

• add validation: cell suspensions linked to files

  #75 opened 2 years ago
  0

• validation for process completeness

  #71 opened 3 years ago
  2

• 20220207: Unit comes with a value associated

  #69 opened 3 years ago
  2

• Improve smartseq2_has_2-3_files to allow 1 fastq if the sequencing is single ended

  #62 opened 3 years ago
  1

• Improve smart-seq 2 test to catch only sequence files

  #58 opened 3 years ago
  0

• Remove or change contains_cell_barcode_info.adoc test

  #57 opened 3 years ago
  1

• Improve no_orphans.adoc so that ignores supplementary files

  #53 opened 3 years ago
  0

• Graph validator - Error in files with two library preparation protocols associated

  #50 opened 3 years ago
  2

• Graph validator requires UMI barcodes for scATAC-seq libraries

  #49 opened 3 years ago
  0

• 2021/11/16: hsapdv_is_used_for_humans

  #44 opened 3 years ago
  1

• 18102021 - Ensure paired_end_2_files.adoc only runs for raw files

  #39 opened 3 years ago
  0

• [BUG] Fix 10x test

  #38 opened 3 years ago
  1

• Create tests to ensure project level information roughly match info in entities

  #37 opened 3 years ago
  1

• Update the ingest-graph-validator instance on the wrangler EC2

  #33 opened 4 years ago
  1

• 31032021: check sequence file process id linking

  #31 opened 2 years ago
  1

• 31032021: sequence file file index check

  #30 opened 3 years ago
  1

• Review all tests to detect outdated/failing tests

  #29 opened 3 years ago
  1

• Is test file_donthave_outward_links.adoc obsolete?

  #27 opened 4 years ago
  1

• Update URI references

  #24 opened 4 years ago
  1

• Missing requirement `wheel`

  #22 opened 4 years ago
  1

• Update installation instructions to reflect current repo.

  #19 opened 4 years ago
  0

• Linking between entities is broken

  #18 opened 3 years ago
  1

• 2020/09/07: file_format_in_file_name

  #16 opened 4 years ago
  1

• False positives by `ensure_seq_libr_prep_protocols.adoc`

  #14 opened 4 years ago
  1

• False errors by 10x_has_more_than_2_files.adoc

  #13 opened 3 years ago
  2

• Update the PyPI package of the ingest-graph-validator to the latest version in the repo (as of 2020-05-28)

  #12 opened 4 years ago
  1

• 20200522: Ensure one fastq set per lane index

  #11 opened 3 years ago
  3

• 20200518: Update <contains_umi/cell_barcode_info> tests

  #10 opened 3 years ago
  0

• Modify the update_sub_ids.py script to ingest api

  #9 opened 4 years ago
  1

• 20200514: edit sequence_file_linkto_cell_suspesion test

  #8 opened 4 years ago
  2

• Add pre-commit hooks

  #6 opened 4 years ago
  0

• Add new rules for cross-entity validation which ensure data is appropriately grouped for processing by the HCA DCP standard analysis pipelines

  #3 opened 4 years ago
  7

• Allow for more than one test per file

  #2 opened 3 years ago
  0

• Improve the Error log for failed tests

  #1 opened 3 years ago
  2