ebi-gene-expression-group/expression-atlas-curation-guide

Curation rules and experiment inclusion criteria for the Expression Atlas

Expression Atlas curation guide

Curation rules and experiment inclusion criteria for the Expression Atlas

Curation Guide

• General curation standards
• Best practice rules
• Bulk experiments
  • Technical guidelines
• Single cell experiments
  • Single cell curation guide
  • Inferred cell type rules
  • Technical guidelines
  • Additional instructions for externally analysed datasets
• Controlled-access experiments
• Ontology term mapping

Atlas inclusion rules

• General
• Differential experiments
• Baseline experiments
• Single cell experiments

Other information

• Accession codes overview
• Accession fields in MAGE-TAB

Validation

• Perl MAGE-TAB validator (see Perl curation scripts and Perl Atlas modules)
• Python Single Cell Atlas validator