ebi-jlu8

Pinned Repositories

DataHarmonizer
A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions fr
Language:JavaScript00
fetch_tool
Tool which allows you to fetch RAW read files from the European Nucleotide Archive (ENA)
Language:Python0 0 00
genome_uploader_co-assemblies
Python script to upload bins and MAGs to ENA (European Nucleotide Archive)
Language:Python0 0 00
growth_curves
growth curve (to replicate for mouse gut catalogue)
Language:R0 0 00
in_house_scripts
Scripts collection for genomic data manipulation
Language:Perl0 0 00
metamap
Snakemake workflow to map and quantify microbial genomes in metagenomic reads
Language:Python00
metaWRAP
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
Language:Shell0 0 00
MiMiC
Minimal Microbial Consortia creation tools
Language:R00
PacBio-16S-CCS-QC-Pipeline
This code accompanies my honors thesis...
Language:Python1 0 00
pb-16S-nf
Nextflow pipeline to analyze PacBio HiFi full-length 16S data
Language:Nextflow00

ebi-jlu8's Repositories

ebi-jlu8/PacBio-16S-CCS-QC-Pipeline
This code accompanies my honors thesis...
Language:Python1 0 00
ebi-jlu8/DataHarmonizer
A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions fr
Language:JavaScript00
ebi-jlu8/fetch_tool
Tool which allows you to fetch RAW read files from the European Nucleotide Archive (ENA)
Language:Python0 0 00
ebi-jlu8/genome_uploader_co-assemblies
Python script to upload bins and MAGs to ENA (European Nucleotide Archive)
Language:Python0 0 00
ebi-jlu8/growth_curves
growth curve (to replicate for mouse gut catalogue)
Language:R0 0 00
ebi-jlu8/in_house_scripts
Scripts collection for genomic data manipulation
Language:Perl0 0 00
ebi-jlu8/metamap
Snakemake workflow to map and quantify microbial genomes in metagenomic reads
Language:Python00
ebi-jlu8/metaWRAP
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
Language:Shell0 0 00
ebi-jlu8/MiMiC
Minimal Microbial Consortia creation tools
Language:R00
ebi-jlu8/pb-16S-nf
Nextflow pipeline to analyze PacBio HiFi full-length 16S data
Language:Nextflow00