Error when using summary$getCoverage() with `crs = NULL` (the default)
annakrystalli opened this issue · 2 comments
annakrystalli commented
crs = null appears to be the default for the getCoverage() method when using it both from a summary object or a wcs object (although not 100% percent clear from the docs, see #89).
When I explicitly use this default in wcs$getCoverage() it works. However when I use it with summary$getCoverage() it throws an error. All other defaults work however.
This is a problem however when trying to build a wrapper. I need to use the summary$getCoverage() because it's the only way I can also access summary$getCoverageStack() if more than one timepoints are requested. But I also want to allow users to pass additional arguments and set those to the default values in the wrapper. Hence, summary$getCoverage(crs = NULL) needs to work as expected.
library(ows4R)
#> Loading required package: geometa
#> Loading ISO 19139 XML schemas...
#> Loading ISO 19115 codelists...
#> Loading IANA mime types...
#> No encoding supplied: defaulting to UTF-8.
#> Loading required package: keyring
coverage <- "Emodnetbio__cal_fin_19582016_L1_err"
wcs <- WCSClient$new(url = "https://geo.vliz.be/geoserver/Emodnetbio/wcs" ,
serviceVersion = "2.0.1")
summary <- wcs$getCapabilities()$findCoverageSummaryById(coverage)
cov_bbox <- summary$getBoundingBox()$BoundingBox$getBBOX()
cov_bbox
#> xmin ymin xmax ymax
#> -75.05 34.95 20.05 75.05
bbox <- OWSUtils$toBBOX(0,5,40, 45)
# from wcs crs default
wcs$getCoverage(coverage,
bbox = bbox,
time = NULL,
crs = NULL)
#> Loading required package: sf
#> Linking to GEOS 3.9.1, GDAL 3.4.0, PROJ 8.1.1; sf_use_s2() is TRUE
#> <GMLEnvelope>
#> ....|-- lowerCorner: 40 0 "1958-02-16T00:00:00"
#> ....|-- upperCorner: 45 5 "2016-11-16T00:00:00"
#> class : SpatRaster
#> dimensions : 50, 49, 2 (nrow, ncol, nlyr)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 0.05, 4.95, 40.05, 45.05 (xmin, xmax, ymin, ymax)
#> coord. ref. : lon/lat WGS 84 (EPSG:4326)
#> source : Emodnetbio__cal_fin_19582016_L1_err_2016-11-16T00_00_00.000Z_40,0,45,5.tif
#> names : Emodnetbio__cal~00Z_40,0,45,5_1, Emodnetbio__cal~00Z_40,0,45,5_2
# from summary no defaults
summary$getCoverage(coverage,
bbox = bbox)
#> <GMLEnvelope>
#> ....|-- lowerCorner: 40 0 "1958-02-16T00:00:00"
#> ....|-- upperCorner: 45 5 "2016-11-16T00:00:00"
#> class : SpatRaster
#> dimensions : 50, 49, 2 (nrow, ncol, nlyr)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 0.05, 4.95, 40.05, 45.05 (xmin, xmax, ymin, ymax)
#> coord. ref. : lon/lat WGS 84 (EPSG:4326)
#> source : Emodnetbio__cal_fin_19582016_L1_err_2016-11-16T00_00_00.000Z_40,0,45,5.tif
#> names : Emodnetbio__cal~00Z_40,0,45,5_1, Emodnetbio__cal~00Z_40,0,45,5_2
# from summary all defaults
summary$getCoverage(coverage,
bbox = bbox,
time = NULL,
crs = NULL,
elevation = NULL,
format = NULL,
rangesubset = NULL,
filename = NULL)
#> <GMLEnvelope>
#> ....|-- lowerCorner: 40 0 "1958-02-16T00:00:00"
#> ....|-- upperCorner: 45 5 "2016-11-16T00:00:00"
#> Warning: `/private/var/folders/yb/936h04ss57x2rdmly_tv561m0000gp/
#> T/RtmpsLCdv5/reprex-156b624026c3a-petit-dore/
#> Emodnetbio__cal_fin_19582016_L1_err_2016-11-16T00_00_00.000Z_40,0,45,5.tif' not
#> recognized as a supported file format. (GDAL error 4)
#> Error: [rast] cannot open file: /private/var/folders/yb/936h04ss57x2rdmly_tv561m0000gp/T/RtmpsLCdv5/reprex-156b624026c3a-petit-dore/Emodnetbio__cal_fin_19582016_L1_err_2016-11-16T00_00_00.000Z_40,0,45,5.tif
# from summary all defaults but no crs default
summary$getCoverage(coverage,
bbox = bbox,
time = NULL,
#crs = NULL,
elevation = NULL,
format = NULL,
rangesubset = NULL,
filename = NULL)
#> <GMLEnvelope>
#> ....|-- lowerCorner: 40 0 "1958-02-16T00:00:00"
#> ....|-- upperCorner: 45 5 "2016-11-16T00:00:00"
#> class : SpatRaster
#> dimensions : 50, 49, 2 (nrow, ncol, nlyr)
#> resolution : 0.1, 0.1 (x, y)
#> extent : 0.05, 4.95, 40.05, 45.05 (xmin, xmax, ymin, ymax)
#> coord. ref. : lon/lat WGS 84 (EPSG:4326)
#> source : Emodnetbio__cal_fin_19582016_L1_err_2016-11-16T00_00_00.000Z_40,0,45,5.tif
#> names : Emodnetbio__cal~00Z_40,0,45,5_1, Emodnetbio__cal~00Z_40,0,45,5_2Created on 2022-08-29 by the reprex package (v2.0.1)
Session info
sessioninfo::session_info()
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#> ──────────────────────────────────────────────────────────────────────────────annakrystalli commented
It would also be great if you could address #89 as I need to provide more detail to our users on what arguments are and what type of values are accepted for each.
annakrystalli commented
Same behaviour if bbox is NULL