This analysis was published, open access, in BMJ Medicine in January 2024. Please cite the manuscript when referencing the code.
A pre-registered protocol and other project materials are available on the OSF.
This is a Docker-ready repsoitory containing code and data for this project. Please consult DEVELOPERS.md for instructions on
how to run this study in a Docker environment. A Docker installation guide is available at INSTALLATION_GUIDE.md
data - This contains all the data for the project that is needed to run the code, or is created by the code.
lib - This contains various helper functions for use in the analysis notebooks.
notebooks - This contains the jupyter notebooks for data processing and handling, the main analysis, figure creation, and the assessment of inter-searcher reliability.
Most of the remaining directories are related to Docker-izing the repository.
Notebooks live in the notebooks/ folder (with an ipynb
extension). You can most easily view them on
nbviewer,
though looking at them in Github should also work.
To do development work, you'll need to set up a local jupyter server
and git repository - see DEVELOPERS.md for more detail.