Pinned Repositories
ebogart.github.io
fluxtools
Constraint-based metabolic models with general nonlinear constraints
multiscale_c4_source
Source code for "Multiscale metabolic modeling of C4 plants: connecting nonlinear genome-scale models to leaf-scale metabolism in developing maize leaves"
PyCyc
Python interface to Pathway Tools
pyipopt
A Python connector to IPOPT
pypolyagamma
Fast C code for sampling Polya-gamma random variates. Builds on Jesse Windle's BayesLogit library.
mitre
The Microbiome Interpretable Temporal Rule Engine
mitre_paper_results
Input code and results from simulations supporting the MITRE paper.
pyipopt
A Python connector to IPOPT
ebogart's Repositories
ebogart/PyCyc
Python interface to Pathway Tools
ebogart/fluxtools
Constraint-based metabolic models with general nonlinear constraints
ebogart/multiscale_c4_source
Source code for "Multiscale metabolic modeling of C4 plants: connecting nonlinear genome-scale models to leaf-scale metabolism in developing maize leaves"
ebogart/pyipopt
A Python connector to IPOPT
ebogart/ebogart.github.io
ebogart/pypolyagamma
Fast C code for sampling Polya-gamma random variates. Builds on Jesse Windle's BayesLogit library.