ecobost

scanreader

Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).

ARDrone_cpp_interface

C++ interface to control the Parrot ARDrone v1 through a Wi-Fi connection. Implemented for Unix (tested in Ubuntu 14.04).

bl3d

Cell segmentation in 3D GCaMP structural recordings

brain2sent

Mapping fMRI brain volumes to a joint low-dimensional space to generate descriptions of the images the subject is seeing.

cnn4brca

Using Convolutional Neural Networks (CNN) for Semantic Segmentation of Breast Cancer Lesions (BRCA). Master's thesis

dermosxai

Explainable methods for medical imaging datasets.

featurevis

Visualize features cells are responsive to via gradient ascent.

iRobot_cpp_interface

C++ interface to control the Roomba iRobot Create through a serial port. Implemented for Windows (tested in Windows 10) and Unix (tested in Ubuntu 14.04).

miniDBMS

Database Management System. School project for my Programming Studio Class (December 2012). Compiles SQL DDL and DML, creates and modifies a database in working memory and writes the database to files when done.

pipeline

Schemata and libraries for neuroscientific data

ecobost/cnn4brca

Using Convolutional Neural Networks (CNN) for Semantic Segmentation of Breast Cancer Lesions (BRCA). Master's thesis

ecobost/brain2sent

Mapping fMRI brain volumes to a joint low-dimensional space to generate descriptions of the images the subject is seeing.

ecobost/featurevis

Visualize features cells are responsive to via gradient ascent.

ecobost/iRobot_cpp_interface

C++ interface to control the Roomba iRobot Create through a serial port. Implemented for Windows (tested in Windows 10) and Unix (tested in Ubuntu 14.04).

ecobost/dermosxai

Explainable methods for medical imaging datasets.

ecobost/miniDBMS

Database Management System. School project for my Programming Studio Class (December 2012). Compiles SQL DDL and DML, creates and modifies a database in working memory and writes the database to files when done.

ecobost/ARDrone_cpp_interface

C++ interface to control the Parrot ARDrone v1 through a Wi-Fi connection. Implemented for Unix (tested in Ubuntu 14.04).

ecobost/atlab-docs.github.io

ecobost/bl3d

Cell segmentation in 3D GCaMP structural recordings

ecobost/pipeline

Schemata and libraries for neuroscientific data

ecobost/attorch

PyTorch Utilities

ecobost/brainreader

Reconstructing visual stimuli shown to mice from two-photon neural recordings

ecobost/CaImAn

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

ecobost/commons

DataJoint schemas for neuroscience data

ecobost/gpu-deploy

Fabric library for Docker GPU deployment

ecobost/image-gpt

ecobost/miniCompiler

Compiler for a C-like language. School project in Haskell done for my Programming Languages class (December 2012)

ecobost/neuro_data

Neuro Datasets for System Identification

ecobost/OOCompiler

Compiler for a Java-like object-oriented language. School project for Compiler Construction class (December 2013).

ecobost/pipecontrol

Website for interactions with pipeline.

ecobost/scanreader-matlab

Matlab TIFF Stack Reader for ScanImage 5 scans (including multiROI).

ecobost/statneuro2

Using real spiking data to compute information measures and decode movement from data. Data courtesy of Prof. J. M. Carmena, University of California, Berkeley.

ecobost/topicNeuro

Apply topic models to neuroscientific literature. For copyright issues some scripts are not included. These are not intended to be used for commercial purposes.

ecobost/VRPTec

Solves the vehicle routing problem with different search heuristics and algorithms. Please ask for authorization if you plan to use for commercial purposes.