Pinned Repositories
Bandage
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
bioconda-recipes
Conda recipes for the bioconda channel.
Captus
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
captus.docs
Documentation and tutorials for Captus: https://github.com/edgardomortiz/Captus
ddrad_tools
A collection of tools designed for working with ddRAD data.
fineRADstructure-tools
Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)
NanoAmp
Species identification via Nanopore sequencing of barcoded amplicons
paralog-finder
Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)
sam2consensus
Get the consensus sequences from SAM (and BAM) files, ignoring the reference
vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
edgardomortiz's Repositories
edgardomortiz/vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
edgardomortiz/Captus
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
edgardomortiz/paralog-finder
Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)
edgardomortiz/sam2consensus
Get the consensus sequences from SAM (and BAM) files, ignoring the reference
edgardomortiz/fineRADstructure-tools
Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)
edgardomortiz/NanoAmp
Species identification via Nanopore sequencing of barcoded amplicons
edgardomortiz/Bandage
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
edgardomortiz/bioconda-recipes
Conda recipes for the bioconda channel.
edgardomortiz/captus.docs
Documentation and tutorials for Captus: https://github.com/edgardomortiz/Captus
edgardomortiz/ddrad_tools
A collection of tools designed for working with ddRAD data.
edgardomortiz/DiscoVista_astral-pro
edgardomortiz/HybPiper
Recovering genes from targeted sequence capture data
edgardomortiz/ipyrad
Interactive assembly and analysis of RAD-seq data sets
edgardomortiz/pyrad
Modifed version of pyrad to finish large assemblies from ipyrad that are stuck in step 6
edgardomortiz/rad-gatk
Tools to obtain locus-based statistics from RADseq data analyzed with GATK
edgardomortiz/radscripts
edgardomortiz/shotgun2rad