edjuaro

Pinned Repositories

ccal
Bioinformatics library for hunting cancers :crab::gun:
Language:Jupyter Notebook00
ccal-noir
Clone of CCAL with calls to R removed
Language:Python1 0 02
cell-migration-quantification
This repository hosts the code and data for the paper "Quantification of cancer cell migration with an integrated experimental-computational pipeline" which can be viewed was a preprint here: https://www.biorxiv.org/content/early/2017/04/25/130526
Language:Jupyter Notebook00
cuzcatlan
Edwin Juarez's support library for GenePattern
Language:Jupyter Notebook21
DifferentialExpression_dev
Early dev repo for the DifferentialExpression module. This repo is temporary.
Language:Jupyter Notebook00
DiffEX_dev
Differential Expression using Pearson Correlation or Information Coefficient.
Language:Python00
GpUnit
Testing framework for GenePattern modules
Language:JavaScript0 0 00
HiC_dev
This is the initial dev branch for a Hierarchical Clustering module. Not really meant for distribution.
Language:Python00
match
Library for match :dancers:
Language:Jupyter Notebook00
tcga
This notebook will access TCGA, preprocess those data, and perform common analyses.
Language:Jupyter Notebook1 0 00

edjuaro's Repositories

edjuaro/cuzcatlan
Edwin Juarez's support library for GenePattern
Language:Jupyter Notebook21
edjuaro/ccal-noir
Clone of CCAL with calls to R removed
Language:Python1 0 02
edjuaro/tcga
This notebook will access TCGA, preprocess those data, and perform common analyses.
Language:Jupyter Notebook1 0 00
edjuaro/ccal
Bioinformatics library for hunting cancers :crab::gun:
Language:Jupyter Notebook00
edjuaro/cell-migration-quantification
This repository hosts the code and data for the paper "Quantification of cancer cell migration with an integrated experimental-computational pipeline" which can be viewed was a preprint here: https://www.biorxiv.org/content/early/2017/04/25/130526
Language:Jupyter Notebook00
edjuaro/DifferentialExpression_dev
Early dev repo for the DifferentialExpression module. This repo is temporary.
Language:Jupyter Notebook00
edjuaro/DiffEX_dev
Differential Expression using Pearson Correlation or Information Coefficient.
Language:Python00
edjuaro/GpUnit
Testing framework for GenePattern modules
Language:JavaScript0 0 00
edjuaro/HiC_dev
This is the initial dev branch for a Hierarchical Clustering module. Not really meant for distribution.
Language:Python00
edjuaro/match
Library for match :dancers:
Language:Jupyter Notebook00
edjuaro/MPSE_2022-09-15
Mendelian Phenotype Search Engine
Language:Python0 0 00
edjuaro/pdx-hts
Analyses for the PDX/High-Throughput-Screening paper
Language:Jupyter Notebook
edjuaro/pseurat
Python light pseudo-wrapper on Seurat.
Language:Jupyter Notebook0 0
edjuaro/select-TCGA-dataset
Choosing a dataset from TCGA-BRCA to be used for GenePattern workshops.
Language:Jupyter Notebook
edjuaro/ssGSEAProjection-gpmodule
A GenePattern module for running the ssGSEAProjection method
Language:R0 0