Pinned Repositories
CHEERS
Credible-set-analysis
Calculate credible sets from GWAS bayes factors
gwas-enrichment
Cross-trait enrichment using GWAS summary stats
myopia-education-MR
Scripts used to run Educational attainment - refractive error bidirectional Mendelian Randomisation
rank-based-INT
Rank-based inverse normal transformation for python
genetics-colocalisation
Colocalisation pipeline for Open Targets Genetics
genetics-finemapping
Fine-mapping pipeline for Open Targets Genetics
genetics-l2g-scoring
Locus-to-gene scoring pipeline
genetics-sumstat-harmoniser
Harmonise GWAS summary statistics against a reference VCF
genetics-v2d-data
Variant to disease dataset workflows for Open Targets Genetics
edm1's Repositories
edm1/rank-based-INT
Rank-based inverse normal transformation for python
edm1/myopia-education-MR
Scripts used to run Educational attainment - refractive error bidirectional Mendelian Randomisation
edm1/Credible-set-analysis
Calculate credible sets from GWAS bayes factors
edm1/gwas-enrichment
Cross-trait enrichment using GWAS summary stats
edm1/CHEERS
edm1/error-aware-demultiplexer
EAD: Probabilistic demultiplexer for Illumina BCL files
edm1/coloc_interim
Interim colocalisation analysis
edm1/gwaspipeline
edm1/gzip_split
Tool for splitting gzipped files whiles preserving headers, etc.
edm1/igh-locus-read-simulator
Simulates single-end MiSeq IGH locus reads
edm1/MRChallenge-Projects
A collection of submitted material for the 2019 MR Data Challenge
edm1/NHS_MRD2
edm1/ologit-gwas
Ordinal logistic regression for GWAS
edm1/parquet_sumstat_tests
Scripts to test optimise parquet format for sum stats
edm1/pipe2q
Script to pipe commands to the PBS queue
edm1/postgap
Linking GWAS studies to genes through cis-regulatory datasets
edm1/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers
aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)
edm1/Sapiens
Sapiens is a human antibody language model based on BERT.
edm1/templates
Template files
edm1/verena_coloc_wrapper
Wrapper scripts for Verena's (yet unnamed) GWAS co-localisation methods
edm1/wdl
Workflow Description Language - Specification and Implementations