Pinned Repositories
3D-Reconstruction-with-Deep-Learning-Methods
List of projects for 3d reconstruction
abba_python
ABBA, controlled from python
bg-atlasapi
A lightweight python module to interact with atlases for systems neuroscience
bg-atlasgen
Scripts to package BrainGlobe atlases
binder-crashcourse
cellshape
3D shape analysis using deep learning
ClearMap
ClearMap 2 with WobblyStitcher, TubeMap and CellMap
clearmap-viz
Satellite repo of ClearMap with package and scripts for visualization, annotation
data-Covid
DataViz Project Covid19France
misc_plots
misc_plots
edoumazane's Repositories
edoumazane/3D-Reconstruction-with-Deep-Learning-Methods
List of projects for 3d reconstruction
edoumazane/abba_python
ABBA, controlled from python
edoumazane/bg-atlasapi
A lightweight python module to interact with atlases for systems neuroscience
edoumazane/bg-atlasgen
Scripts to package BrainGlobe atlases
edoumazane/binder-crashcourse
edoumazane/cellshape
3D shape analysis using deep learning
edoumazane/ClearMap
ClearMap 2 with WobblyStitcher, TubeMap and CellMap
edoumazane/clearmap-viz
Satellite repo of ClearMap with package and scripts for visualization, annotation
edoumazane/misc_plots
misc_plots
edoumazane/computer-science
:mortar_board: Path to a free self-taught education in Computer Science!
edoumazane/diffusion-point-cloud
:thought_balloon: Diffusion Probabilistic Models for 3D Point Cloud Generation (CVPR 2021)
edoumazane/dotfiles
Default configuration for Le Wagon's students
edoumazane/doumazane
Welcome page on Github
edoumazane/gbm_hackathon
edoumazane/HEST
HEST: Bringing Spatial Transcriptomics and Histopathology together - NeurIPS 2024 (Spotlight)
edoumazane/HistoSSLscaling
Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., MedRxiv (2023). We publicly release Phikon 🚀
edoumazane/icm_toolbox
edoumazane/learn_gencore_bio_nyu_tuto
learn_gencore_bio_nyu_tuto
edoumazane/marimo
A reactive notebook for Python — run reproducible experiments, execute as a script, deploy as an app, and version with git.
edoumazane/minimal_image_project
edoumazane/minimal_streamlit
edoumazane/napari
napari: a fast, interactive, multi-dimensional image viewer for python
edoumazane/photo-selection-app
edoumazane/SEDR
edoumazane/series_viewer
A Bokeh application to view MRI series or any other 3D numpy array.
edoumazane/slicereg
A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
edoumazane/spatialdata-2.5D-3D
edoumazane/split-oligo-designer
oligo design for split HCR
edoumazane/tutos
edoumazane/VelibExplore