Pinned Repositories
aimsMSRC
Code and data accompanying Advanced Imaging Mass Spectrometry 2018 (AIMS.2018) R workshop
alphapeptstats
Python Package for the downstream analysis of label-free mass-spectrometry-based proteomics data
AnIntro2PWA4Metabolomics
A workshop introducing Pathway Analysis for Metabolomics
Cardinal
Mass spectrometry imaging tools
Cardinal-flow
User manual for the data flow developed in R with the Cardinal analysis package and its respective user interface.
Cardinal_functions
Functions I wrote for CardinalMSI (http://www.cardinalmsi.org) for imaging mass spectrometry analysis.
cardinalscripts
codenvy
Codenvy
collab
course
rcourse
educhicano's Repositories
educhicano/alphapeptstats
Python Package for the downstream analysis of label-free mass-spectrometry-based proteomics data
educhicano/AnIntro2PWA4Metabolomics
A workshop introducing Pathway Analysis for Metabolomics
educhicano/Cardinal-flow
User manual for the data flow developed in R with the Cardinal analysis package and its respective user interface.
educhicano/collab
educhicano/DiaNN
DIA-NN - a fast and easy to use tool for processing data-independent acquisition (DIA) proteomics data
educhicano/directlfq
Fast and accurate label-free quantification for small and very large numbers of proteomes
educhicano/GettingStartedWithTensorFlow2
Assignments from the Getting Started With TensorFlow 2 course from Imperial College London
educhicano/handson-ml3
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.
educhicano/HiTMaP
An R package of High-resolution Informatics Toolbox for Maldi-imaging Proteomics
educhicano/M2aia
Mass spectrometry imaging applications for interactive analysis in MITK (M²aia)
educhicano/MassBank-data
Official repository of open data MassBank records
educhicano/MetaboAnalystR
R package for MetaboAnalyst
educhicano/MetaboAnnotationTutorials
Examples and tutorials for the MetaboAnnotation, MetaboCoreUtils and CompoundDb R packages
educhicano/MLwR
Machine Learning with R
educhicano/MOFA2_tutorials
MOFA2 Tutorials
educhicano/MSIr
MSIr: Automatic Registration Service for Mass Spectrometry Imaging and Histology
educhicano/MSstats-Shiny
Shiny for MSstats and MSstatsTMT
educhicano/MSstats_labelfree_preprocessing
This repo will contain scripts, sample reports and other resources related to the use of MSstats for preprocessing and normalization of proteomics data
educhicano/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
educhicano/NormalyzerDE
Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.
educhicano/omicsViewer
educhicano/PDD-shiny
Processing of DIA-NN Data
educhicano/phantasus
Visual exploratory analysis of gene expression data
educhicano/PIGNON
educhicano/POMAShiny
:apple: Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysis
educhicano/protein-coverage-summarizer
Computes the percent of the residues in each protein sequence that have been identified, based on a list of identified peptides. A graphical user interface (GUI) is provided to allow the user to select the input files, set the options, and browse the coverage results.
educhicano/pydiaid
An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Institute of Biochemistry.
educhicano/SpatialProteomicsQC
educhicano/TurboOmics
Next.js application for Proteomics and Metabolomics integration implemented in TurboPutative
educhicano/UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..