This material is maintained by Carlos P Cantalapiedra and Bruno Contreras Moreira
This is a five-session course for learning the basics of the Linux shell and scripting for data sciences such as genomics and breeding.
| session | title | required time | URL |
|---|---|---|---|
| 0 | Setup | prior to course | session 0 |
| 1 | Linux basics and files | 2h | session 1 |
| 2 | Processes and scripts | 2h | session 2 |
| 3 | Parsing with regular expressions | 2h | session 3 |
| 4 | Perl one-liners | 2h | session 4 |
| 5 | Advanced scripts | 2h | session 5 |
We post regularly about these and related bioinformatics topics at the #!/perl/bioinfo blog, mostly in Spanish.