eegk

Computational Biologist. Currently working with multi-omics. Passionate about immunology, evolution and statistics.

Icahn School of Medicine - Mount SinaiNew York City

Pinned Repositories

1-2-3...u24_4_cimacs
Language:R0 1 00
ABIS
Language:R0 1 00
allergy_Aranda_etal
count_data
00
arcasHLA
Fast and accurate in silico inference of HLA genotypes from RNA-seq
Language:Python0 0 00
AutoClass
Language:Jupyter Notebook00
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
0 0 00
Bachelor_project
Code for my Bachelor thesis project
Language:R00
bindSC
Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and CyTOF data
Language:R0 0 00
cyttools
Brian-C-cyttools
Language:R00
seqtk
Toolkit for processing sequences in FASTA/Q formats
Language:C1 1 00

eegk's Repositories

eegk/allergy_Aranda_etal
count_data
00
eegk/AutoClass
Language:Jupyter Notebook00
eegk/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
0 0 00
eegk/Bachelor_project
Code for my Bachelor thesis project
Language:R00
eegk/bindSC
Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and CyTOF data
Language:R0 0 00
eegk/CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
Language:R00
eegk/cellpypes
Cell type pipes for R
Language:R00
eegk/clustergrammer
WebGL Clustergrammer JavaScript Library
Language:JavaScript0 0 00
eegk/cNMF
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
Language:Jupyter Notebook0 0 00
eegk/cyttools
Brian-C-cyttools
Language:R00
eegk/covid19_radiology
Language:R1 0
eegk/DeepCycle
Cell cycle inference in single-cell RNA-seq
Language:Python0 0
eegk/downsample
downsample columns such that the sum is equal in all columns
Language:R0 0
eegk/eegk.github.io
Gonzalez-Kozlova Lab
Language:HTML0 0
eegk/equatiomatic
Convert models to LaTeX equations
Language:R0 0
eegk/gtsummary
Presentation-Ready Data Summary and Analytic Result Tables
eegk/MOGONET
MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in biomedical applications.
Language:Python0 0
eegk/mvi-lab.github.io
Project: Academic home page Heath Blackmon: evolution, sex chromosomes, phylogenetics
Language:HTML0 0
eegk/NICHES
Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
eegk/orchest
A new kind of IDE for Data Science.
Language:Python0 0
eegk/QDiffusion.jl
Leveraging the full dimensionality of single-cell transcriptomics (among other things!)
eegk/qupath
QuPath - Bioimage analysis & digital pathology
Language:Java0 0
eegk/rms
Regression Modeling Strategies
Language:Assembly1 0
eegk/SCMER
Marker Selection by matching manifolds and elastic net
Language:Python0 0
eegk/scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
0 0
eegk/SimBench
Language:R0 0
eegk/TCR-BCR-seq-analysis
T/B cell receptor sequencing analysis notes
eegk/u01_r_analysis
Language:R1 0
eegk/ucdeconvolve
UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data
eegk/vartrix
Single-Cell Genotyping Tool