eegk
Computational Biologist. Currently working with multi-omics. Passionate about immunology, evolution and statistics.
Icahn School of Medicine - Mount SinaiNew York City
Pinned Repositories
1-2-3...u24_4_cimacs
ABIS
allergy_Aranda_etal
count_data
arcasHLA
Fast and accurate in silico inference of HLA genotypes from RNA-seq
AutoClass
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Bachelor_project
Code for my Bachelor thesis project
bindSC
Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and CyTOF data
cyttools
Brian-C-cyttools
seqtk
Toolkit for processing sequences in FASTA/Q formats
eegk's Repositories
eegk/allergy_Aranda_etal
count_data
eegk/AutoClass
eegk/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
eegk/Bachelor_project
Code for my Bachelor thesis project
eegk/bindSC
Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and CyTOF data
eegk/CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
eegk/cellpypes
Cell type pipes for R
eegk/clustergrammer
WebGL Clustergrammer JavaScript Library
eegk/cNMF
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
eegk/cyttools
Brian-C-cyttools
eegk/DeepCycle
Cell cycle inference in single-cell RNA-seq
eegk/downsample
downsample columns such that the sum is equal in all columns
eegk/dr-crumblr_test
eegk/eegk.github.io
Gonzalez-Kozlova Lab
eegk/equatiomatic
Convert models to LaTeX equations
eegk/gtsummary
Presentation-Ready Data Summary and Analytic Result Tables
eegk/NICHES
Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
eegk/orchest
A new kind of IDE for Data Science.
eegk/QDiffusion.jl
Leveraging the full dimensionality of single-cell transcriptomics (among other things!)
eegk/qrcode-terminal
QRCodes in your terminal, cause thats hot.
eegk/qupath
QuPath - Bioimage analysis & digital pathology
eegk/r-color-palettes
Comprehensive list of color palettes available in R โค๏ธ๐งก๐๐๐๐
eegk/rms
Regression Modeling Strategies
eegk/SCMER
Marker Selection by matching manifolds and elastic net
eegk/scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
eegk/sequoia-pub
SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention
eegk/SimBench
eegk/TCR-BCR-seq-analysis
T/B cell receptor sequencing analysis notes
eegk/ucdeconvolve
UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data
eegk/vartrix
Single-Cell Genotyping Tool