efwatts
evolutionary biologist, bioinformatician/computational biologist, Cumberland Plateau salamander
University of VirginiaCharlottesville, Virginia
Pinned Repositories
Plethodonkentucki_RangeLimits
This repository contains the files associated with Watts et al. 2024. Hard edges, soft edges, and species range evolution: A genomic analysis of the Cumberland Plateau salamander *in review*
drought_index
Using Riffomonas' tutorial project to practice reproducible research practices with drought data
GenomeBrowserTest
This repository is for testing the UCSC Genome Browser site with POGO-generated data and data that already exists in Genome Browser.
LRP_Troubleshooting
learning LRP pipeline & troubleshooting automation
Plethodonkentucki_SpeciesDelimitation
This repository contains the files associated with Watts et al. 2024. Cryptic Species within a Cryptic Species? Species Delimitation in the Cumberland Plateau Salamander, Plethodon kentucki. Herpetologica.
PoGo2GenomeBrowser
This repository is for taking corrected.GTF files and refined.FASTA files (from the Long Read Proteogenomics pipeline) and a dataframe of Peptides all the way to the UCSC Genome Browser
PoGo
PoGo is a proteogenomic tool which allows mapping of peptides identified through mass spectrometry to a reference genome through provided gene annotation.
Alternative-Proteome-Detection-Project
chloe_project
Mohi_MDS_LRP
This repository is for LRP analysis for the Mohi Lab project focused on discovering proteoforms related to MDS.
efwatts's Repositories
efwatts/LRP_Troubleshooting
learning LRP pipeline & troubleshooting automation
efwatts/PoGo2GenomeBrowser
This repository is for taking corrected.GTF files and refined.FASTA files (from the Long Read Proteogenomics pipeline) and a dataframe of Peptides all the way to the UCSC Genome Browser
efwatts/GenomeBrowserTest
This repository is for testing the UCSC Genome Browser site with POGO-generated data and data that already exists in Genome Browser.
efwatts/drought_index
Using Riffomonas' tutorial project to practice reproducible research practices with drought data
efwatts/Plethodonkentucki_RangeLimits
This repository contains the files associated with Watts et al. 2024. Hard edges, soft edges, and species range evolution: A genomic analysis of the Cumberland Plateau salamander *in review*
efwatts/Plethodonkentucki_SpeciesDelimitation
This repository contains the files associated with Watts et al. 2024. Cryptic Species within a Cryptic Species? Species Delimitation in the Cumberland Plateau Salamander, Plethodon kentucki. Herpetologica.