Pinned Repositories
ccp2_docker
Build Docker container for circompara2
ccp2_nf
Run CirComPara2 through Nextflow
ccp2tools
Utility R functions for CirComPara2
CCP_simulator
An RNA-seq simulator for circular RNA expression
CircModel
comprehensive comparison of differential expression models applied to circRNA count matrix
CirComPara
:microscope: A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
circompara-docker
:whale: Docker image for CirComPara
circompara2
Improved bioinformatic pipeline to identify and quantify circRNA expression from RNA-seq data by combining multiple circRNA detection methods
CRAFT
CRAFT is a computational pipeline that predicts circRNA sequence and molecular interactions with miRNAs and RBPs, along with their coding potential. CRAFT provides a comprehensive graphical visualization of the results, links to several knowledge databases, extensive functional enrichment analysis and combination of predictions for different circRNAs. CRAFT is a useful tool to help the user explore the potential regulatory networks involving the circRNAs of interest and generate hypotheses about the cooperation of circRNAs into the regulation of biological processes.
mirandmore2
:microscope: A bioinformatics software pipeline to characterize miRNAs and moRNAs from small RNA-seq data
egaffo's Repositories
egaffo/CirComPara
:microscope: A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
egaffo/circompara2
Improved bioinformatic pipeline to identify and quantify circRNA expression from RNA-seq data by combining multiple circRNA detection methods
egaffo/circompara-docker
:whale: Docker image for CirComPara
egaffo/mirandmore2
:microscope: A bioinformatics software pipeline to characterize miRNAs and moRNAs from small RNA-seq data
egaffo/ccp2tools
Utility R functions for CirComPara2
egaffo/ccp2_docker
Build Docker container for circompara2
egaffo/ccp2_nf
Run CirComPara2 through Nextflow
egaffo/CCP_simulator
An RNA-seq simulator for circular RNA expression
egaffo/CircModel
comprehensive comparison of differential expression models applied to circRNA count matrix
egaffo/CRAFT
CRAFT is a computational pipeline that predicts circRNA sequence and molecular interactions with miRNAs and RBPs, along with their coding potential. CRAFT provides a comprehensive graphical visualization of the results, links to several knowledge databases, extensive functional enrichment analysis and combination of predictions for different circRNAs. CRAFT is a useful tool to help the user explore the potential regulatory networks involving the circRNAs of interest and generate hypotheses about the cooperation of circRNAs into the regulation of biological processes.
egaffo/CREART
Circular RNA Expression Analysis R Tools
egaffo/datasciencecoursera
egaffo/datasharing
The Leek group guide to data sharing
egaffo/DEM4circ
Benchmarking differential expression methods on circRNA RNA-seq data
egaffo/ExData_Plotting1
Plotting Assignment 1 for Exploratory Data Analysis
egaffo/gcd_prj
Coursera course Getting and Cleaning Data project
egaffo/ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
egaffo/RegressionModels_prj
Project assignment for the Regression Models course on Coursera
egaffo/RepData_PeerAssessment1
Peer Assessment 1 for Reproducible Research
egaffo/ShrinkBayes
R package for differential expression: sequencing counts (RNAseq), microarrays, and HTRNAi
egaffo/StatisticalInference_prj
Project assignment for the Statistical Inference course on Coursera