Pinned Repositories
augur
Pipeline components for real-time phylodynamic analysis
auspice
Web app for visualizing pathogen evolution
auspice.us
aws-cli
Universal Command Line Interface for Amazon Web Services
bioconda-recipes
Conda recipes for the bioconda channel.
Bioinformatics-with-Python-Cookbook-Second-Edition
Bioinformatics with Python Cookbook Second Edition, published by Packt
C-WAP
SC2 variant detection and composition pipeline
cli
The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.
cvxopt
CVXOPT -- Python Software for Convex Optimization
datrie
Fast, efficiently stored Trie for Python. Uses libdatrie.
egekcmz's Repositories
egekcmz/augur
Pipeline components for real-time phylodynamic analysis
egekcmz/auspice
Web app for visualizing pathogen evolution
egekcmz/auspice.us
egekcmz/aws-cli
Universal Command Line Interface for Amazon Web Services
egekcmz/bioconda-recipes
Conda recipes for the bioconda channel.
egekcmz/Bioinformatics-with-Python-Cookbook-Second-Edition
Bioinformatics with Python Cookbook Second Edition, published by Packt
egekcmz/C-WAP
SC2 variant detection and composition pipeline
egekcmz/cli
The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.
egekcmz/cvxopt
CVXOPT -- Python Software for Convex Optimization
egekcmz/datrie
Fast, efficiently stored Trie for Python. Uses libdatrie.
egekcmz/dbvar
dbVar
egekcmz/DeViVa
Scripts for analyzing SARS-CoV-2 variants
egekcmz/ensembl-vep
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
egekcmz/faunadb-python
Python driver for FaunaDB
egekcmz/hisat-genotype
egekcmz/hisat2
Graph-based alignment (Hierarchical Graph FM index)
egekcmz/IQ-TREE
Efficient phylogenomic software by maximum likelihood
egekcmz/opencv
Open Source Computer Vision Library
egekcmz/pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
egekcmz/pip
The Python package installer
egekcmz/psutil
Cross-platform lib for process and system monitoring in Python
egekcmz/rethinkdb
The open-source database for the realtime web.
egekcmz/spark-moderndataengineering
The source code for the book Modern Data Engineering with Apache Spark
egekcmz/sra-tools
SRA Tools
egekcmz/standard-RAxML
egekcmz/VaQuERo
SARS-CoV-2 (Va)riant (Qu)antification in s(E)wage, designed for (Ro)bustness
egekcmz/vcftools
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.