Pinned Repositories
ai-biopsy
Biopsy-free prediction of prostate cancer aggressiveness using deep learning and radiology imaging
bioinformatics
Tool including several common bioinformatics software applications
bridge2ai-docs
Bridge2AI Voice | Documentation Dashboard
bridge2ai-redcap
Bridge2AI Voice | REDCap
CIN
dgvar
Screening deleterious germline variants (DGVs) in WCM UC cohort
hello-mess-nf
A Nextflow pipeline to experiment with DSL2 + Zero Mess
pmkb-bot
PMKB bot for the Precision Medicine Knowledge Base using Microsoft Bot Framework.
stork
Deep learning enables robust assessment and selection of human blastocysts after in vitro fertilization
stork-v
This project aims to enhance the assessment of fertilized human embryos, a critical step in the process of in vitro fertilization (VF). The research paper behind this project introduced BELA, the Blastocyst Evaluation Learning Algorithm, a novel model for embryo ploidy status prediction.
Englander Institute for Precision Medicine's Repositories
eipm/bridge2ai-redcap
Bridge2AI Voice | REDCap
eipm/CIN
eipm/dgvar
Screening deleterious germline variants (DGVs) in WCM UC cohort
eipm/stork
Deep learning enables robust assessment and selection of human blastocysts after in vitro fertilization
eipm/hello-mess-nf
A Nextflow pipeline to experiment with DSL2 + Zero Mess
eipm/pmkb-bot
PMKB bot for the Precision Medicine Knowledge Base using Microsoft Bot Framework.
eipm/ai-biopsy
Biopsy-free prediction of prostate cancer aggressiveness using deep learning and radiology imaging
eipm/beacon
Dockerized GA4GH Beacon
eipm/stork-v
This project aims to enhance the assessment of fertilized human embryos, a critical step in the process of in vitro fertilization (VF). The research paper behind this project introduced BELA, the Blastocyst Evaluation Learning Algorithm, a novel model for embryo ploidy status prediction.
eipm/unity-workshop
R Lab XR in Healthcare Unity Workshop
eipm/cnn-smoothie
Deep Convolutional Neural Networks Enable Discrimination of Heterogeneous Digital Pathology Images
eipm/ERVmap
ERVmap is one part curated database of human proviral ERV loci and one part a stringent algorithm to determine which ERVs are transcribed in their RNA seq data.
eipm/bioinformatics
Tool including several common bioinformatics software applications
eipm/bridge2ai-docs
Bridge2AI Voice | Documentation Dashboard
eipm/hello-nextflow
An hello world pipeline to test nextflow installations.
eipm/paper_trail
Track changes to your models' data. Good for auditing or versioning.
eipm/rnaseq-messaging
RNAseq pipeline to demonstrate use of messaging
eipm/.github
README for the Englander Institute for Precision Medicine Org Page
eipm/b2ai-peds-protocol
eipm/bowtie2
A fast and sensitive gapped read aligner
eipm/DispatcherSuite
A suite of microservices to interface different messaging systems.
eipm/omero-server-docker
EIPM fork of OMERO.server production docker image, with OMERO.dropbox support added.
eipm/picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
eipm/SalmonTE
SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances
eipm/stork-a
eipm/STRIDES
Supporting the Azure + NIH STRIDES initiative
eipm/sunspot_autocomplete