ekazuo

ekazuo's Stars

• danielecook/Awesome-Bioinformatics

  A curated list of awesome Bioinformatics libraries and software.

  3.2k616

• manubot/manubot

  Python utilities for Manubot: Manuscripts, open and automated

  Language:Python43142

• slimtoolkit/slim

  Slim(toolkit): Don't change anything in your container image and minify it by up to 30x (and for compiled languages even more) making it secure too! (free and open source)

  Language:Go19.5k730

• GoogleContainerTools/distroless

  🥑 Language focused docker images, minus the operating system.

  Language:Starlark19k1.2k

• nextgenusfs/funannotate

  Eukaryotic Genome Annotation Pipeline

  Language:Python32285

• wdecoster/nanopack

  An overview of all nanopack tools

  Language:Python21015

• nanoporetech/dorado

  Oxford Nanopore's Basecaller

  Language:C++52763

• nanoporetech/medaka

  Sequence correction provided by ONT Research

  Language:Python42074

• wdecoster/chopper

  Language:Rust15012

• jts/nanopolish

  Signal-level algorithms for MinION data

  Language:C++568159

• rapidsai/cudf

  cuDF - GPU DataFrame Library

  Language:C++8.4k903

• The-Sequence-Ontology/SO-Ontologies

  Collect of SO Ontologies

  Language:Makefile9637

• biobakery/biobakery

  bioBakery tools for meta'omic profiling

  Language:Shell25973

• jlevy/the-art-of-command-line

  Master the command line, in one page

  154k14.6k

• jorvis/biocode

  Bioinformatics code libraries and scripts

  Language:Python498248

• pangenome/pggb

  the pangenome graph builder

  Language:Shell39044

• google/deepvariant

  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

  Language:Python3.2k725

• griffithlab/rnaseq_tutorial

  Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

  Language:R1.3k623

• pegi3s/dockerfiles

  This repository contains Docker files for the images maintained by the Phenotypic Evolution Group at the Institute for Molecular and Cell Biology / Instituto de Investigação e Inovação em Saúde da Universidade do Porto.

  Language:Dockerfile4714

• StaPH-B/docker-builds

  :package: :whale: Dockerfiles and documentation on tools for public health bioinformatics

  Language:Dockerfile191119

• nextflow-io/nextflow

  A DSL for data-driven computational pipelines

  Language:Groovy2.8k629

• Gaius-Augustus/GALBA

  GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.

  Language:Perl1304

• BioContainers/containers

  Bioinformatics containers

  Language:Dockerfile683248

• Textualize/rich-cli

  Rich-cli is a command line toolbox for fancy output in the terminal

  Language:Python3.1k76

• pierrelapalu/icones-bandeiras-br-uf

  Pacote de ícones de bandeiras de Estados do Brasil padronizados e normalizados em estilo flat.

  6319

• iqtree/iqtree2

  NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org

  Language:C++24457

• rahuldkjain/github-profile-readme-generator

  🚀 Generate GitHub profile README easily with the latest add-ons like visitors count, GitHub stats, etc using minimal UI.

  Language:JavaScript21.6k6.9k

• lmigueel/Bioinformatica

  Pipelines e scripts para análises em Bioinformática

  17726

• BIMSBbioinfo/pigx

  Pipelines in genomics

  Language:HTML226

• nextstrain/ncov

  Nextstrain build for novel coronavirus SARS-CoV-2

  Language:Python1.4k403