ekernf01/knockoffs_shareseq

Experiments on mammalian multi-omics data for our manuscript on knockoffs and TRN inference.

SHARE-seq skin experiments

Code to repeat our experiments on the SHARE-seq mouse skin data for our manuscript "General conditional hypothesis tests suggest fundamental limits on regulatory network identification". For more info, see the central project repo. You can repeat our experiments by using a clean install of Ubuntu 20.04 and running run_on_aws.sh. Plots will be saved to a sub-directory called v14.

You can also interact with our code inside our docker image:

docker pull    ekernf01/knockoffs_shareseq
docker run -it --rm ekernf01/knockoffs_shareseq

This will land you in an interactive shell in the Docker container, and you can run our experiments by entering scripts and running run_in_docker.sh.