ekg/hhga

Issues

• allow a larger number of genotypes

  #30 opened 8 years ago by ekg
  0

• three or more apparent haplotypes at repeats

  #29 opened 8 years ago by ekg
  9

• hunt down ngram handling re interactions

  #28 opened 8 years ago by nikete
  0

• unitig namespace

  #27 opened 9 years ago by ekg
  0

• allele support sorting seems to be backwards

  #26 opened 9 years ago by ekg
  1

• Scaling up to 1000 genomes

  #15 opened 9 years ago by nikete
  2

• vw cache segfaults

  #16 opened 9 years ago by nikete
  1

• column unknown at 1:22085674 .. Bad ALT value in the GT field, the index [2] out of bounds [2/2].

  #17 opened 9 years ago by nikete
  2

• link logistic error rates

  #14 opened 9 years ago by nikete
  2

• vw experiments

  #13 opened 9 years ago by ekg
  14

• vw feature needs

  #24 opened 9 years ago by nikete
  0

• document and reproduce the precisionFDA pipeline

  #23 opened 9 years ago by ekg
  0

• This example kills vw

  #20 opened 9 years ago by ekg
  1

• bootstrap and multiclass bug

  #22 opened 9 years ago by nikete
  0

• indel representation is wrong

  #21 opened 9 years ago by ekg
  2

• changes to format

  #19 opened 9 years ago by ekg
  1

• soft clip features in reads

  #12 opened 9 years ago by ekg
  0

• log space qualities and mapping qualities

  #7 opened 9 years ago by ekg
  0

• use QUAL and other annotations from the VCF as features

  #5 opened 9 years ago by ekg
  0

• apply vw model to VCF+BAM

  #6 opened 9 years ago by ekg
  0

• annotate records with source variant information

  #3 opened 9 years ago by ekg
  0