ekimb
PhD student in Berger Group at @mit.
MIT Computer Science and Artificial Intelligence LaboratoryCambridge, MA
Pinned Repositories
arewebioyet.github.io
Rust in bioinformatics and computational biology
bioconda-recipes
Conda recipes for the bioconda channel.
contig-connectors
dotfiles
configs for various tools
geosketch
Geometry-preserving random sampling
mapquik
Efficient low-divergence mapping of long reads in minimizer space
mendel
generating musical compositions from DNA sequences
pas
Rust syntax in Turkish
pasha
parallel algorithms for small hitting set approximations
rust-mdbg
minimizer-space de Bruijn graphs (mdBG) for whole genome assembly
ekimb's Repositories
ekimb/rust-mdbg
minimizer-space de Bruijn graphs (mdBG) for whole genome assembly
ekimb/mapquik
Efficient low-divergence mapping of long reads in minimizer space
ekimb/pas
Rust syntax in Turkish
ekimb/pasha
parallel algorithms for small hitting set approximations
ekimb/mendel
generating musical compositions from DNA sequences
ekimb/contig-connectors
ekimb/arewebioyet.github.io
Rust in bioinformatics and computational biology
ekimb/bioconda-recipes
Conda recipes for the bioconda channel.
ekimb/dotfiles
configs for various tools
ekimb/geosketch
Geometry-preserving random sampling
ekimb/kmercamel
KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.
ekimb/kmers
A bit-packed k-mer representation (and relevant utilities) for rust
ekimb/livecode
A repository of readmes, techniques, notes and other materials about how i live code in SuperCollider. A (sorta) companion repository to co34pt_livecode
ekimb/MinIsoClust
ekimb/rouille
Rust programming, in French.
ekimb/rust-debruijn
De Bruijn graphs in Rust
ekimb/rust-parallelfastx
Parallel iteration of FASTA/FASTQ files, for when sequence order doesn't matter but speed does
ekimb/rust-seq2kminmers
Iterate k-min-mers from a DNA sequence in Rust
ekimb/seq
A high-performance, Pythonic language for bioinformatics
ekimb/seq-mdbg
ekimb/seq_io
FASTA and FASTQ parsing in Rust
ekimb/sleaping
ekimb/sourmash
Quickly search, compare, and analyze genomic and metagenomic data sets.
ekimb/strobemers
A repository for generating strobemers and evalaution
ekimb/wfa
Rust WFA and WFλ
ekimb/www
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes