ekirving
Assistant Professor in population genetics at the Globe Institute, University of Copenhagen.
University of CopenhagenCopenhagen
Pinned Repositories
2019-05-22-oxford
Oxford Software Carpentry Workshop
AncestralPaths
AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestries to segments of chromosomes the decribe the path back through a population history that segment has taken.
ccr5_paper
Source code from the paper: "Tracing the evolutionary path of the CCR5delta32 deletion via ancient and modern genomes" (2023) medRxiv
chicken_paper
Source code from the paper: "The biocultural origins and dispersal of domestic chickens" (2022) PNAS
ctvt_paper
Source code from the paper: "The evolutionary history of dogs in the Americas" (2018) Science
mesoneo_paper
Source code from the paper: "The Selection Landscape and Genetic Legacy of Ancient Eurasians" (2022) bioRxiv
ms_paper
Source code from the paper: "Elevated Genetic Risk for Multiple Sclerosis Originated in Steppe Pastoralist Populations." (2022) bioRxiv
qpbrute
Heuristic search algorithm for fitting qpGraph models
rabbit_paper
Source code from the paper: "Rabbits and the Specious Origins of Domestication" (2018) TREE
refpanel
Pipeline to build a large human reference panel, using publicly available genomes
ekirving's Repositories
ekirving/qpbrute
Heuristic search algorithm for fitting qpGraph models
ekirving/ctvt_paper
Source code from the paper: "The evolutionary history of dogs in the Americas" (2018) Science
ekirving/mesoneo_paper
Source code from the paper: "The Selection Landscape and Genetic Legacy of Ancient Eurasians" (2022) bioRxiv
ekirving/refpanel
Pipeline to build a large human reference panel, using publicly available genomes
ekirving/AncestralPaths
AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestries to segments of chromosomes the decribe the path back through a population history that segment has taken.
ekirving/chicken_paper
Source code from the paper: "The biocultural origins and dispersal of domestic chickens" (2022) PNAS
ekirving/rabbit_paper
Source code from the paper: "Rabbits and the Specious Origins of Domestication" (2018) TREE
ekirving/2019-05-22-oxford
Oxford Software Carpentry Workshop
ekirving/alleletraj
ekirving/ccr5_paper
Source code from the paper: "Tracing the evolutionary path of the CCR5delta32 deletion via ancient and modern genomes" (2023) medRxiv
ekirving/clues
Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data
ekirving/ms_paper
Source code from the paper: "Elevated Genetic Risk for Multiple Sclerosis Originated in Steppe Pastoralist Populations." (2022) bioRxiv
ekirving/palm
Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies
ekirving/planets
SWC Workshop Git Lesson
ekirving/selection
ekirving/sulawesi_paper
Source code from the paper: "Synchronous diversification of Sulawesi's iconic artiodactyls driven by recent geological events" (2018) Proc. R. Soc. B
ekirving/temporal-selection
Temporal selection exercises for PopGen21