elhumble
Conservation genomics and wildlife forensics. Mostly using R.
University of EdinburghEdinburgh
Pinned Repositories
Agaz_85K_workflow_2018
🇦🇶 Workflow for processing data from the Agaz 90K SNP chip
ggpedigree
Draw nice pedigrees with ggplot2.
grains
⚖🍚 R package for calculating how much water you need for your grains
manta_pop_gen_2022
🧬🌊Code for our manuscript "Comparative population genomics of manta rays has global implications for mangement"
map2slim
GOslim annotation
minION_species_ID
Species ID workflow with ONT amplicon data
SHO_analysis_2020
R scripts for running downstream analysis of resequencing data
SHO_reseq_2020
Read mapping and SNP calling run on UoE compute cluster
SHO_reseq_2022
🖥️🧬 Code for our manuscript "Conservation management strategy impacts inbreeding and mutation load in scimitar-horned oryx"
SHO_roh_load_2022
🖥️🧬 Code for our manuscript "Conservation management strategy impacts inbreeding and mutation load in scimitar-horned oryx"
elhumble's Repositories
elhumble/minION_species_ID
Species ID workflow with ONT amplicon data
elhumble/SHO_analysis_2020
R scripts for running downstream analysis of resequencing data
elhumble/SHO_roh_load_2022
🖥️🧬 Code for our manuscript "Conservation management strategy impacts inbreeding and mutation load in scimitar-horned oryx"
elhumble/manta_pop_gen_2022
🧬🌊Code for our manuscript "Comparative population genomics of manta rays has global implications for mangement"
elhumble/SHO_reseq_2020
Read mapping and SNP calling run on UoE compute cluster
elhumble/Agaz_85K_workflow_2018
🇦🇶 Workflow for processing data from the Agaz 90K SNP chip
elhumble/ggpedigree
Draw nice pedigrees with ggplot2.
elhumble/grains
⚖🍚 R package for calculating how much water you need for your grains
elhumble/map2slim
GOslim annotation
elhumble/mobulid_phylo
Workflow for generating mobulid phylogenetics figures 📉🐟
elhumble/primerdesignR
R package for designing primers
elhumble/shiny_wildlifedetectR
🦏🐅🐘 Shiny app for running key wildlife forensic and population genetic analyses
elhumble/SHO_reseq_2022
🖥️🧬 Code for our manuscript "Conservation management strategy impacts inbreeding and mutation load in scimitar-horned oryx"
elhumble/snp_filtering
Transcriptomic SNP filtering workflow
elhumble/wildlifedetectR
🐘🐅🦏 R package for running key wildlife forensic and population genetic analyses
elhumble/elhumble.github.io
🐋🐋🐋 Jekyll source code for my personal website
elhumble/mastoffel.github.io
elhumble/oryx_Y_chr
Analysis of oryx Y chromosomes on UoE compute cluster
elhumble/rad_seals
scripts for rad analysis
elhumble/rhina_popgen_2024
Scripts and data for population genomics analysis of bowmouth guitarfish
elhumble/seal_demography_2018
📉💻 Workflow for reconstructing demographic history with SNPs
elhumble/seal_rad_2018
🌊🇦🇶 RAD sequencing analysis workflow
elhumble/shiny_snps
💫✏️Teaching resource for population genetics with SNPs
elhumble/sri_lanka_map
🌏🐠🇱🇰 Sri Lanka fish markets
elhumble/thames_fish