Pinned Repositories
ads1-notebooks
Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
AMLcountdown
bam_readgroup_to_json
Extract a readgroup from a BAM, and write it as json
bio-cwl-tools
Fork CWL CommandLineTool descriptions for biology/life-sciences related applications
biobambam-docker
bwa-docker
dna-me-pipeline
DCC/DAC methylation pipeline source
docker_test
dockstore-cgpmap
Mapping using PCAP
WGS-nextflow-workflow
elisabethgoldman's Repositories
elisabethgoldman/ads1-notebooks
Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
elisabethgoldman/AMLcountdown
elisabethgoldman/bam_readgroup_to_json
Extract a readgroup from a BAM, and write it as json
elisabethgoldman/bio-cwl-tools
Fork CWL CommandLineTool descriptions for biology/life-sciences related applications
elisabethgoldman/biobambam-docker
elisabethgoldman/bwa-docker
elisabethgoldman/dna-me-pipeline
DCC/DAC methylation pipeline source
elisabethgoldman/docker_test
elisabethgoldman/dockstore-cgpmap
Mapping using PCAP
elisabethgoldman/gatk-docker
elisabethgoldman/gdc-dnaseq-cwl
CWL for GDC DNASeq workflows
elisabethgoldman/json-to-sqlite
elisabethgoldman/flipflopblood
Whole Blood Simulations of Hematopoietic Stem Cells
elisabethgoldman/gdc-R-portal
elisabethgoldman/giab_data_indexes
This repository contains data indexes from NIST's Genome in a Bottle project.
elisabethgoldman/iTerm2-Color-Schemes
Over 200 terminal color schemes/themes for iTerm/iTerm2. Includes ports to Terminal, Konsole, PuTTY, Xresources, XRDB, Remmina, Termite, XFCE, Tilda, FreeBSD VT, Terminator, Kitty, MobaXterm, LXTerminal, Microsoft's Windows Terminal, Visual Studio
elisabethgoldman/m3-command-line
Module 3: Introduction to the Command Line
elisabethgoldman/merge_sqlite
elisabethgoldman/ML-Regression-for-imbalaced-data
This contains application data and code for article about regression for imbalanced data in machine learning
elisabethgoldman/picard-docker
elisabethgoldman/picard_metrics_sqlite
elisabethgoldman/project-based-learning
Curated list of project-based tutorials
elisabethgoldman/readgroup_json_db
elisabethgoldman/samtools-metrics-sqlite
elisabethgoldman/ThinkStats2
Text and supporting code for Think Stats, 2nd Edition
elisabethgoldman/tumor-evolution-nf-workflow
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
elisabethgoldman/WGBSMethylSnake
A Snakemake pipeline for WGBS data analysis
elisabethgoldman/WLMT