Illkirch, France - 16th to 19th January 2017
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- (Ab)dulrahman Azab
- (A)nthony Bretaudeau
- (Bé)rénice Batut
- (B)jörn Grüning
- (G)ildas Le Corguillé
- (F)abien Mareuil
- (Fr)ederik Coppens
- (J)ulien Seiler - Head of IT, IGBMC, Illkirch, France
- (O)livia Doppelt
- (Sa)skia Hiltermann
- (S)téphanie Le Gras - Bioinformatician, IGBMC, Illkirch, France
- (V)ictoria Dominguez
- (Y)ouri Hoogstrate
All trainings will be held in the 7Hotel, private room Vegas 2 and 3.
Lunch will be taken in 7Hotel restaurant.
| Time | Topic | Links | Instructor |
|---|---|---|---|
| 09:00 | Welcome and Introduction | Slides | All |
| 10:00 | Morning Break | ||
| 10:30 | Galaxy Tool Integration Best Practices | Slides | A + Bé + B + G |
| 11:30 | Planemo Tool Wrapping | Slides | A + Bé + B + G |
| 12:30 | Lunch, catered | ||
| 13:30 | Planemo Tool Wrapping | Slides | A + Bé + B + G |
| 15:30 | Afternoon Break | ||
| 16:00 | Writing dependencies : Conda recipes | Slides | A + Bé + B + G |
| 18:00 | Close Day 1, Dinner on your own |
| Time | Topic | Links | Instructor |
|---|---|---|---|
| 09:00 | Wrap Session | A + Bé + B + G | |
| 10:00 | Morning Break | ||
| 10:30 | Wrap Session | Slides | |
| 12:30 | Lunch, catered | ||
| 13:30 | Wrap Session | Slides | |
| 15:30 | Afternoon Break | ||
| 16:00 | ToolShed upload and tool-iuc PR | Slides | Bé + B + G |
| 18:00 | Close Day 2, Dinner on your own |
| Time | Topic | Links | Instructor |
|---|---|---|---|
| 09:00 | BioBlend API | Slides | O + F + J |
| 10:00 | Morning Break | ||
| 10:30 | BioBlend API | O + F + J | |
| 11:30 | Galaxy Visualisation | Sa + Y | |
| 12:30 | Lunch, catered | ||
| 13:30 | Galaxy Visualisation | Sa + Y | |
| 15:30 | Afternoon Break | ||
| 16:00 | Galaxy Interactive Tour | Bé + B + S | |
| 18:00 | Close Day 3 | ||
| 20:00 | Working Dinner |
| Time | Topic | Links | Instructor |
|---|---|---|---|
| 09:00 | Installation | Slides | J |
| 09:25 | Galaxy Configuration Hierarchy | Slides | J |
| 09:50 | Database choice and configuration | Slides | J |
| 10:10 | Morning Break | ||
| 10:40 | Galaxy Handlers | Slides | J |
| 10:55 | Web server choices and configuration | Slides | S |
| 11:10 | Connecting Galaxy to a compute cluster | Slides | S |
| 11:20 | Galaxy Administration | Slides | S |
| 11:40 | Defining and importing genomes, Data Managers | Slides | S |
| 11:20 | Users, Groups, and Quotas | Slides | S |
| 12:00 | Building an European Community | Fr | |
| 12:30 | Lunch, catered | ||
| 13:30 | Docker | Ab + V | |
| 15:30 | Afternoon Break | ||
| 16:00 | Close Day 4 |