elizabethmcd

Pinned Repositories

• 2019-05-19-glbio-docker

  Language:Python0200

• 2019-06-27-REU-DataCarpentry

  Slides and R code for teaching Intro to R for REU Data Carpentry @ UW-Madison on 2019-06-27

  0200

• BLAST-DAGMan

  Directed Acyclic Workflow Manager for running BLAST all-v-all on HTCondor

  Language:Python0200

• EBPR-MAGs

  Extracting, refining, and utilizing MAGs from EBPR reactor metagenomic time-series

  Language:HTML1202

• elizabethmcd.github.io

  Personal website built with Quarto

  Language:HTML3201

• genomes-MAGs-database

  Creation of a database of Genbank genomes including isolate reference genomes and MAGs, and parallelizing 1000s of genome searches for a specific marker

  Language:Python8122

• MEHG

  Exploring the phylogenetic and metabolic diversity of microbial mercury methylation

  Language:R3200

• metabolisHMM

  Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs

  Language:Python183595

• ppk1_Database

  Repository for assigning Accumulibacter clade designations based on ppk1 nomenclature

  1200

• R3R4

  Metagenomic assembly and metatranscriptomic analysis of co-occuring Accumulibacter populations

  Language:Jupyter Notebook2200

elizabethmcd's Repositories