elizabethmcd/metabolisHMM
Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
PythonGPL-3.0
Issues
- 1
Updated python issues
#60 opened by susheelbhanu - 0
single-marker-phylogeny > view on the tree
#59 opened by elizabethmcd - 1
dev branch
#48 opened by elizabethmcd - 0
Check for - in genome names
#58 opened by elizabethmcd - 2
Error running summarize-metabolism
#57 opened by bbaker567 - 1
markers and phylogeny
#55 opened by elizabethmcd - 0
SciPy Package Dependencies and Updates
#56 opened by elizabethmcd - 22
- 1
- 3
Hmmsearch crashes at search-custom-markers
#53 opened by nikobiota - 3
Fasta formating
#52 opened by Streptomyces1 - 2
genome names cannot contain dashes?
#49 opened by taylorreiter - 1
TOL DB
#50 opened by elizabethmcd - 1
Demo dataset
#51 opened by elizabethmcd - 3
Missing files in sdist
#46 opened by thatch - 12
Create a conda release
#45 opened by vinisalazar - 3
make-heatmap.R script location?
#44 opened by Binvir - 10
no hmmersearch for summarize-metabolism
#40 opened by Thexiyang - 0
fixes
#43 opened by elizabethmcd - 2
Kofam search yields TC bit threshhold error
#42 opened by morgvevans - 1
version numbers
#39 opened by elizabethmcd - 1
Documentations and figures
#38 opened by elizabethmcd - 2
Additions to create-genome-phylogeny
#37 opened by elizabethmcd - 1
installation instructions
#35 opened by elizabethmcd - 2
R script options
#34 opened by elizabethmcd - 1
prodigal quiet
#36 opened by elizabethmcd - 0
iTOL options
#33 opened by elizabethmcd - 0
heatmap row order
#31 opened by elizabethmcd - 1
single marker corresponding tree making
#32 opened by elizabethmcd - 0
plotting option
#29 opened by elizabethmcd - 0
programs installed
#30 opened by elizabethmcd - 0
iTol metadata files for phylogeny workflows
#28 opened by elizabethmcd - 4
Missing markers for summaries
#23 opened by elizabethmcd - 3
Metabolic Summary heatmap
#20 opened by elizabethmcd - 3
connect to kofamkoala
#26 opened by elizabethmcd - 0
- 0
check for markers download
#27 opened by elizabethmcd - 0
output format
#25 opened by elizabethmcd - 0
Documentation
#18 opened by elizabethmcd - 0
Major Release Tasks
#19 opened by elizabethmcd - 0
Reformatting fasta files
#22 opened by elizabethmcd - 0
Any Pathway > Visualization
#17 opened by elizabethmcd - 0
- 2
- 2
Directory names
#11 opened by elizabethmcd - 0
Metabolic Summary > Visualization
#16 opened by elizabethmcd - 1
Concatenate script
#15 opened by elizabethmcd - 1
tfdA test case
#13 opened by elizabethmcd - 1
refseq hits
#14 opened by elizabethmcd - 0
genome directory for metabolic summary
#10 opened by elizabethmcd