Pinned Repositories
btb-forestry
Build phylogenetic trees for specified M.bovis samples
btb-seq
Nextflow script for processing WGS data
BovTB-nf
Nextflow script for processing WGS data
Classify-nf
csu_scripts
Pathogen NGS data processing
FluSeqID
A pipeline for detection and extraction of accurate whole genome consensus of Influenza virus from clinical samples or primary passages
Forestry-nf
MinorVar
Determine the presence of minor (sub-consensus) variants in viral NGS datasets
SpoTyping-v2.0
SpoTyping-v2.0
ViewBovine
An Interactive Visualisation Tool to Investigate Bovine Tuberculosis Infection Cases
ellisrichardj's Repositories
ellisrichardj/BovTB-nf
Nextflow script for processing WGS data
ellisrichardj/csu_scripts
Pathogen NGS data processing
ellisrichardj/FluSeqID
A pipeline for detection and extraction of accurate whole genome consensus of Influenza virus from clinical samples or primary passages
ellisrichardj/Classify-nf
ellisrichardj/Forestry-nf
ellisrichardj/MinorVar
Determine the presence of minor (sub-consensus) variants in viral NGS datasets
ellisrichardj/SpoTyping-v2.0
SpoTyping-v2.0
ellisrichardj/ViewBovine
An Interactive Visualisation Tool to Investigate Bovine Tuberculosis Infection Cases