ellisztamas
Post-doctoral researcher at GMI in Vienna interested in quantitative genetics, especially of plants.
Gregor Mendel InstituteVienna
Pinned Repositories
1001crosses
2022_bisulphite_protocol
Quality control for a tagementation-based bisulphite sequencing protocol using dNTPS with methylated cytosines
amajus_dispersal_ms
Code to support the manuscript "Joint estimation of paternity, sibships and pollen dispersal in a snapdragon hybrid zone"
amajus_mating
Analysis of assortative mating in a snapdragon hybrid zone, and in experimental arrays
Ammiad-1
arghqtl
Tools for plotting and downstream analysis of R/QTL objects in R
bs_seq_with_typing_errors
curriculum_vitae
A repo for tracking my CV
dogging_expt
fecundity_components
Analysis of fitness components, including seed size and number, in *A. thaliana*
ellisztamas's Repositories
ellisztamas/arghqtl
Tools for plotting and downstream analysis of R/QTL objects in R
ellisztamas/fecundity_components
Analysis of fitness components, including seed size and number, in *A. thaliana*
ellisztamas/1001crosses
ellisztamas/2022_bisulphite_protocol
Quality control for a tagementation-based bisulphite sequencing protocol using dNTPS with methylated cytosines
ellisztamas/amajus_dispersal_ms
Code to support the manuscript "Joint estimation of paternity, sibships and pollen dispersal in a snapdragon hybrid zone"
ellisztamas/amajus_mating
Analysis of assortative mating in a snapdragon hybrid zone, and in experimental arrays
ellisztamas/Ammiad-1
ellisztamas/bs_seq_with_typing_errors
ellisztamas/curriculum_vitae
A repo for tracking my CV
ellisztamas/dogging_expt
ellisztamas/ellisztamas.github.io
:triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.
ellisztamas/evolvienna
Poster presentation
ellisztamas/faps
Inference of paternity and sibling relationships accounting for uncertainty in genealogy
ellisztamas/hdydi_shiny
Shiny example apps
ellisztamas/hmm_ancestry_and_methylation
Developing a Hidden-Markov model to infer ancestry and DNA methylation status in a cross
ellisztamas/ibdpainting
Identify parents of a crossed individual by comparing identity in windows across their genomes
ellisztamas/meth_pedigree
ellisztamas/methlab
Python tools to automate common tasks for the epiclines ERC project in the Nordborg group at the Gregor Mendel Institute.
ellisztamas/methylation-common-garden
ellisztamas/methylpy
WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
ellisztamas/methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
ellisztamas/nextflow_pipelines
The set of NGS processing pipelines used at Babraham
ellisztamas/nf-haplocaller
Nextflow pipeline for GATK best practices (HaplotypeCaller)
ellisztamas/QGglmm
Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observed phenotypic mean, phenotypic variance and additive genetic variance.
ellisztamas/quantifying_pleiotropy_ms
A repo to store code and manuscript details for the paper "A quantitative framework for pleiotropic mechanims
ellisztamas/simmiad
R package to simulate populations of wild Emmer wheat from the Kibbutz Ammiad
ellisztamas/sintillate
An R package for quantifying trade-offs, pleiotropy and genotype-by-environment interactions
ellisztamas/SNPmatch
A simple python library to identify the most likely strain from the population
ellisztamas/soil_adaptation_ellis_agren
A reciprocal transplant experiment disentangling the effects of climate and soil type in *Arabidopsis thaliana*
ellisztamas/tumv_ms