ellyyuyang

Postdoc at AAU in Aalborg, Denmark | PhD at HKU in Environmental Engineering

Pinned Repositories

rgi
Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
Language:Python342 20 25078
astool
Scripts for antiSMASH/MiBIG data extraction and manipulation
Language:Python8 1 41
mfd_novelty_section
This is a repo for the novelty section of the MFD paper 1.
Language:R00
abs-quanti-nanopore
This repo contains the commands to reproduce the absolute quantification results in the paper "Rapid Absolute Quantification of Pathogens and ARGs by Nanopore Sequencing" by Yang, Yu et al. 2021.
4 1 00
tidyheatmaps
Heatmaps from Tidy Data
Language:R49 2 83
kegg_parser
An HTML parser for "KEGG Mapper – Reconstruct Result" pages
Language:Python2 1 11
singlem
Novelty-inclusive microbial community profiling of shotgun metagenomes
Language:Python137 9 13718

ellyyuyang/abs-quanti-nanopore
This repo contains the commands to reproduce the absolute quantification results in the paper "Rapid Absolute Quantification of Pathogens and ARGs by Nanopore Sequencing" by Yang, Yu et al. 2021.
4 1 00