A python package for epidemiology. Epipy is a Python package for epidemiology. It contains (or will contain…) tools for analyzing and visualizing epidemiology data. Epipy can currently produce:
- stratified summary statistics
- case tree and checkerboard plots
- epicurves
- analysis of case attribute (e.g. sex) by generation
- 2x2 tables with odds ratio and relative risk
- summary of cluster basic reproduction numbers
Install using pip:
pip install epipy
Or clone the repository and install using setup.py:
git clone https://github.com/cmrivers/epipy.git
python setup.py install
EpiPy is in development. Please feel free to contribute. Contact me at cmrivers@vbi.vt.edu or @cmyeaton with any questions.
The docs live at: cmrivers.github.io/epipy