Elo Lab

Finland

Pinned Repositories

ASA
Adaptive Sequence Alignment
Language:Python2 1 00
Bioinfo_Tcell_projects_22
EMBL-EBI scRNA Bioinformatics T cell course 2022
Language:HTML3 0 01
diatools
Language:Python2 2 00
glaDIAtor
Tool for processing metaproteomics DDA and DIA data.
Language:Python3 1 10
ILoReg
A tool for high-resolution cell population identification from single-cell RNA-seq data
Language:R5 1 20
multisubjectDSanalysis
Language:R16 2 04
RepViz
RepViz is a visualization software for genomic data
Language:R2 2 12
RolDE
Robust longitudinal Differential Expression
Language:R5 2 30
scshaper
A tool for linear trajectory inference from single-cell RNA-seq data through discrete pseudotime estimation using Shortest HAmiltonian path PERmuted clustering.
Language:R5 1 11
VarSCAT
Variant sequence context analysis tool
Language:Python8 1 11

Elo Lab's Repositories

elolab/multisubjectDSanalysis
Language:R16 2 04
elolab/VarSCAT
Variant sequence context analysis tool
Language:Python8 1 11
elolab/ILoReg
A tool for high-resolution cell population identification from single-cell RNA-seq data
Language:R5 1 20
elolab/RolDE
Robust longitudinal Differential Expression
Language:R5 2 30
elolab/Bioinfo_Tcell_projects_22
EMBL-EBI scRNA Bioinformatics T cell course 2022
Language:HTML3 0 01
elolab/glaDIAtor
Tool for processing metaproteomics DDA and DIA data.
Language:Python3 1 10
elolab/ASA
Adaptive Sequence Alignment
Language:Python2 1 00
elolab/Olissipo_hands-on_session2
Analysing single-cell data using R
Language:R2 0 00
elolab/Rodeo
Language:R2 1 13
elolab/Coralysis
A multi-level integration algorithm for sensitive integration, reference-mapping, and cell state identification in single-cell data.
Language:R1
elolab/PASI
Language:R1 0 00
elolab/RolDE-benchmarking
Custom codes for methods used in the study
Language:R1 1 00
elolab/VarSCAT-analysis
VarsSCAT analysis scripts
Language:R1 0 00
elolab/CellRomeR
R package for phenotypic clustering of cells from microscopy images.
Language:R0 0 00
elolab/scshaper-benchmarking
Language:R0 1 10
elolab/T1D-CyTOF-analysis
Dataset specific analysis steps for type 1 diabetes
Language:R0 1 00
elolab/Totem
Language:HTML0 1 10
elolab/Totem-benchmarking
Language:HTML0 1 00
elolab/compbio_splicing_exercise
Splicing hands-on exercise for COMPBIO Asia 23
Language:R0 0
elolab/Coralysis-reproducibility
Language:R
elolab/glaDIAtor-nf
Nextflow tool for processing metaproteomics DDA and DIA data
Language:Scheme
elolab/Hitchhikers_Guide_scRNAseq_course
The Hitchhiker's Guide to scRNA-seq
Language:HTML0 0
elolab/jointmodels
Language:R
elolab/PAL
Pathway Analysis of Longitudinal data
Language:R0 0
elolab/PAL-benchmarking
Language:R0 0
elolab/PhosPiR
Language:R0 0
elolab/proteomics-guix
Language:Scheme
elolab/proteomics-guix-nonfree
Language:Scheme
elolab/scib-pipeline
Snakemake pipeline that works with the scIB package to benchmark data integration methods.
Language:Python
elolab/Totem-protocol
Language:HTML0 0