Should FastQC be ran on demultiplexed libraries?
cnluzon opened this issue · 0 comments
cnluzon commented
I have run a real example with all demultiplexed samples and I realised I get FastQC reports in the MultiQC that correspond to each demultiplexed sample, separately. Obviously, if the FASTQ files are in fastq/ they get FastQC'ed.
This should not be a problem, but I noticed that results are off because of demultiplexed libraries being so small compared to the real IP pool.