chip-seq-pipelines

There are 6 repositories under chip-seq-pipelines topic.

kundajelab/chipseq_pipeline
AQUAS TF and histone ChIP-seq pipeline
Language:Java106 40 4340
KoesGroup/Snakemake_ChIPseq_PE
Pipeline for the analysis of PE ChIP-seq data
Language:Python14 3 194
RenneLab/CnR-flow
CUT&RUN-Flow, A Nextflow pipeline for QC, tag trimming, normalization, and peak calling for data from CUT&RUN experiments.
Language:Nextflow5 3 64
elsasserlab/minute
MINUTE-ChIP data analysis workflow
Language:Python2 34 940
mgildea87/ChIPseq
Paired-end ChIPseq data processing workflow designed for execution on the BigPurple HPC. Primary software used: FastQC, Fastp, Bowtie 2, MACS2, MultiQC
Language:Python2 2 00
metamaden/seq_answers
Sequencing data preprocessing
Language:R2 0