KoesGroup/Snakemake_ChIPseq_PE

Issues

• Write a publication in the "The Journal of Open Source Software"

  #29 opened 6 years ago
  3

• Implement genome visualization of the data in the pipeline

  #27 opened 6 years ago
  2

• Add a DAG of the pipeline in the README

  #26 opened 6 years ago
  2

• Handle GTF or GFF formats

  #24 opened 6 years ago
  0

• HPC Cluster execution

  #23 opened 6 years ago
  0

• Move the definitions of the group for deep tools to the configuration file

  #21 opened 6 years ago
  0

• Make a documentation for deeptools

  #20 opened 6 years ago
  1

• Implement multiQC

  #18 opened 6 years ago
  1

• Deeptools : Correlation plot

  #16 opened 6 years ago
  1

• Single end

  #15 opened 6 years ago
  4

• Add protected and temporary to the relevant outputs

  #14 opened 6 years ago
  2

• Some logs are incomplete

  #13 opened 6 years ago
  2

• Mistake

  #12 opened 6 years ago
  2

• test

  #11 opened 6 years ago
  1

• Create one .yaml environment file per rule

  #10 opened 6 years ago
  3

• Use all treatment and control

  #9 opened 6 years ago
  3

• order in the rules

  #8 opened 6 years ago
  6

• Implement singularity

  #6 opened 6 years ago
  2

• bedgraph -bga

  #4 opened 6 years ago
  2