Create one .yaml environment file per rule
Closed this issue · 3 comments
mgalland commented
To increase reproducibility and avoid the need to install and activate a conda virtual environemnt before running Snakemake, it would be good to create one environment file per rule (envs/rule1.yaml) in order to use snakemake with the --use-conda argument.
JihedC commented
Where do you think it makes more sense to implement the changes?
On the develop branch or on the bed branch?
mgalland commented
As this is a new feature, I would create a new branch with git checkout -b issue-10. Then if everything works well on that branch, it will be merged with the develop branch