Pinned Repositories
allel-specific-expression-analysis-in-F1
ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
Protocols
Protocols for the lab
Snakemake_ATAC_seq
Pipeline for the analysis of PE ATAC-seq data
Snakemake_ChIPseq_PE
Pipeline for the analysis of PE ChIP-seq data
Snakemake_hisat-DESeq
A Snakemake pipeline to analyse RNA-Seq reads
Snakemake_salmon
test snakemake pipeline for RNA_seq data
Snakemake_SRA_grep_and_map
Downloads and maps SRA data from NCBI
Snakemake_trinity
pipeline to create a transcriptome fasta from raw RNA-seq fastq without a reference genome
viral-ngs
Viral genomics analysis pipelines
KoesGroup's Repositories
KoesGroup/Snakemake_ChIPseq_PE
Pipeline for the analysis of PE ChIP-seq data
KoesGroup/Snakemake_hisat-DESeq
A Snakemake pipeline to analyse RNA-Seq reads
KoesGroup/ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
KoesGroup/Protocols
Protocols for the lab
KoesGroup/Snakemake_salmon
test snakemake pipeline for RNA_seq data
KoesGroup/Snakemake_SRA_grep_and_map
Downloads and maps SRA data from NCBI
KoesGroup/Snakemake_trinity
pipeline to create a transcriptome fasta from raw RNA-seq fastq without a reference genome
KoesGroup/allel-specific-expression-analysis-in-F1
KoesGroup/qPCR_app
App for analysis and visualization of qPCR results from the output files of the ImageQuant3 qPCR machine
KoesGroup/RNAseqCluster
A shiny app that normalizes RNAseq counts files.
KoesGroup/Snakemake_ATAC_seq
Pipeline for the analysis of PE ATAC-seq data
KoesGroup/viral-ngs
Viral genomics analysis pipelines
KoesGroup/RetrieveGene
python script to retrieve a sequence from a genome or tyranscriptome feasts file.
KoesGroup/retrieveSequence
KoesGroup/Snakemake_ChIP_seq_SE
Pipeline for the analysis of Single-end ChIP-seq data
KoesGroup/Snakemake_plant_methylSeekR
Snakemake pipeline to adjust the R package methylSeekR to plant genomes