EMDB and EMPIAR
Public archives for 3D structural and imaging data from cryo-EM and related imaging modalities
Hinxton, UK
Pinned Repositories
3dstrudel
Base library of the 3D-STRUDEL project
ahds
Python package to parse and provide access to headers and data streams in Amira(R) files
emdb-empiar.github.io
Repository documentation for EMDB/EMPIAR software projects
emdb-xml-translator
A set of translators for converting EMDB XML files 1.9 <-> 3.0 <-> 1.9
empiar-depositor
Python package for depositing into EMPIAR
noid
Mint NOIDs using a CLI or API
sfftk
Toolkit for working with EMDB-SFF and other segmentation file formats
sfftk-plus
Extended toolkit for working with EMDB-SFF and OMERO (using VTK for geometrical manipulation)
sfftk-rw
Toolkit for reading and writing EMDB-SFF files
SPW
EMPIAR Sample Preparation Collection Schema
EMDB and EMPIAR's Repositories
emdb-empiar/ahds
Python package to parse and provide access to headers and data streams in Amira(R) files
emdb-empiar/empiar-depositor
Python package for depositing into EMPIAR
emdb-empiar/sfftk
Toolkit for working with EMDB-SFF and other segmentation file formats
emdb-empiar/noid
Mint NOIDs using a CLI or API
emdb-empiar/3dstrudel
Base library of the 3D-STRUDEL project
emdb-empiar/emdb-empiar.github.io
Repository documentation for EMDB/EMPIAR software projects
emdb-empiar/emdb-xml-translator
A set of translators for converting EMDB XML files 1.9 <-> 3.0 <-> 1.9
emdb-empiar/sfftk-rw
Toolkit for reading and writing EMDB-SFF files
emdb-empiar/bandbox
bandbox is a CLI tool to quickly evaluate how organised your dataset is.
emdb-empiar/pubmed-author-affiliations
Search PubMed for author affiliations of EMDB associated publications
emdb-empiar/sfftk-plus
Extended toolkit for working with EMDB-SFF and OMERO (using VTK for geometrical manipulation)
emdb-empiar/SPW
EMPIAR Sample Preparation Collection Schema
emdb-empiar/emdb-schemas
A collection of emdb.xsd schemas
emdb-empiar/EMDB-SFF
Open data model for segmentation file format
emdb-empiar/sfftk-migrate
Utility to Update Old EMDB-SFF Files
emdb-empiar/ccpem3D
Showcase of 3D viewing webcomponent for VTP files
emdb-empiar/cif-emdb-translator
Translator for mmCIF files to XML header files that comply with EMDB version 3 and later schemas
emdb-empiar/emdb-json-schemas
JSON Schemas for files describing the EMDB archive
emdb-empiar/emdb-molstar
Molstar EMDB implementation
emdb-empiar/EMDBassist
emdb-empiar/maptools
emdb-empiar/masks
simple tool to create image masks
emdb-empiar/meshmaker
VTK-based program to compute isosurfaces from CCP4 maps
emdb-empiar/names
Key utilities designed to abstract the names of entries in EMDB, EMPIAR and the upcoming segmentation (image annotation) archive.
emdb-empiar/strudel_score
emdb-empiar/styled
Style your terminal with ease!