Source Code | Documentation | Examples
MERLIN is a method for Motion Estimation Retrospective correction Leveraging Interleaved Navigators. This repository contains python code (in pymerlin) for performing motion correction on suitable MRI data. The example pipelines in pymerlin are specifically designed to be used with 3D radial, ZTE, acquisitions.
Install the python tools for pymerlin with pip by cloning this repository and running the following command in the main folder
pip install -e .Besides the python dependencies listed in pymerlin/requirements.txt, MERLIN has the following dependencies:
- riesling 3D non-cartesian reconstruction toolbox.
- HD-BET for efficient brain extraction
- FSL for various processing
- Further details about the usage is found in the documentation.
- Examples and code to reproduce figures for paper submitted to MRM can be found in the merlin_mrm repository.
Suitable paper for citation of this repository is in revision. Stay tuned!