emilyzakem

eco-nitrify

Microbial ecosystem model with explicit nitrification and vertical water column resolution.

eco-nitrify_Cfixation

eco-watercolumn

Nitrogen-based microbial ecosystem model for a vertical marine water column

global_phi_calculation

Datasets and code for calculating data-based "phi," the threshold for viable anaerobic metabolism in the ocean.

heteroprokaryotes

OMconsumption

Code for stochastic 0D and water column 1D models of microbial consumption of organic matter.

OMZ_2Dmodel_ISME2020

Code for 2D OMZ model used in Zakem et al. 2020 ISME J. publication

OMZ_chemostat

Code for N-cycling microbial ecosystem model in Zakem et al ISME 2019. Run RedoxNcycle_chemostat.m

reminCNP

Water column model code and input for Zakem and Levine GBC 2019 "Systematic variation in marine dissolved organic matter stoichiometry and remineralization ratios as a function of lability"

trajectories

emilyzakem/eco-watercolumn

Nitrogen-based microbial ecosystem model for a vertical marine water column

emilyzakem/global_phi_calculation

Datasets and code for calculating data-based "phi," the threshold for viable anaerobic metabolism in the ocean.

emilyzakem/eco-nitrify

Microbial ecosystem model with explicit nitrification and vertical water column resolution.

emilyzakem/eco-nitrify_Cfixation

emilyzakem/OMconsumption

Code for stochastic 0D and water column 1D models of microbial consumption of organic matter.

emilyzakem/OMZ_2Dmodel_ISME2020

Code for 2D OMZ model used in Zakem et al. 2020 ISME J. publication

emilyzakem/OMZ_chemostat

Code for N-cycling microbial ecosystem model in Zakem et al ISME 2019. Run RedoxNcycle_chemostat.m

emilyzakem/picoheterotrophs_DarwinMITgcm

Code and run files for Darwin-MITgcm ecosystem model for the picoheterotrophic functional diversity project

emilyzakem/reminCNP

Water column model code and input for Zakem and Levine GBC 2019 "Systematic variation in marine dissolved organic matter stoichiometry and remineralization ratios as a function of lability"

emilyzakem/trajectories

emilyzakem/ZhangLabXMU